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1.
RNA polymerase switch in transcription of yeast rDNA: Role of transcription factor UAF (upstream activation factor) in silencing rDNA transcription by RNA polymerase II
Loan Vu, Imran Siddiqi, Bum-Soo Lee, Cathleen A. Josaitis, Masayasu Nomura
Proc Natl Acad Sci U S A. 1999 Apr 13; 96(8): 4390–4395. doi: 10.1073/pnas.96.8.4390
PMCID:
PMC16342
AbstractArticlePDF–239K
2.
Histones are required for transcription of yeast rRNA genes by RNA polymerase I
Prasad Tongaonkar, Sarah L. French, Melanie L. Oakes, Loan Vu, David A. Schneider, Ann L. Beyer, Masayasu Nomura
Proc Natl Acad Sci U S A. 2005 Jul 19; 102(29): 10129–10134. Published online 2005 Jul 7. doi: 10.1073/pnas.0504563102
PMCID:
PMC1177414
AbstractArticlePDF–434K
3.
Histones H3 and H4 are components of upstream activation factor required for the high-level transcription of yeast rDNA by RNA polymerase I
John Keener, Jonathan A. Dodd, Dominique Lalo, Masayasu Nomura
Proc Natl Acad Sci U S A. 1997 Dec 9; 94(25): 13458–13462. doi: 10.1073/pnas.94.25.13458
PMCID:
PMC28327
AbstractArticlePDF–235K
4.
Alternative Chromatin Structures of the 35S rRNA Genes in Saccharomyces cerevisiae Provide a Molecular Basis for the Selective Recruitment of RNA Polymerases I and II
Hannah Goetze, Manuel Wittner, Stephan Hamperl, Maria Hondele, Katharina Merz, Ulrike Stoeckl, Joachim Griesenbeck
Mol Cell Biol. 2010 Apr; 30(8): 2028–2045. Published online 2010 Feb 12. doi: 10.1128/MCB.01512-09
PMCID:
PMC2849473
AbstractArticlePDF–8.9M
5.
Role of TATA Binding Protein (TBP) in Yeast Ribosomal DNA Transcription by RNA Polymerase I: Defects in the Dual Functions of Transcription Factor UAF Cannot Be Suppressed by TBP
Imran Siddiqi, John Keener, Loan Vu, Masayasu Nomura
Mol Cell Biol. 2001 Apr; 21(7): 2292–2297. doi: 10.1128/MCB.21.7.2292-2297.2001
PMCID:
PMC86863
AbstractArticlePDF–185K
6.
In Vivo Binding and Hierarchy of Assembly of the Yeast RNA Polymerase I Transcription Factors
Licia Bordi, Francesco Cioci, Giorgio Camilloni
Mol Biol Cell. 2001 Mar; 12(3): 753–760. doi: 10.1091/mbc.12.3.753
PMCID:
PMC30978
AbstractArticlePDF–342K
7.
Role of Histone Deacetylase Rpd3 in Regulating rRNA Gene Transcription and Nucleolar Structure in Yeast
Melanie L. Oakes, Imran Siddiqi, Sarah L. French, Loan Vu, Manabu Sato, John P. Aris, Ann L. Beyer, Masayasu Nomura
Mol Cell Biol. 2006 May; 26(10): 3889–3901. doi: 10.1128/MCB.26.10.3889-3901.2006
PMCID:
PMC1489006
AbstractArticlePDF–813K
8.
Characterization of the fission yeast ribosomal DNA binding factor: components share homology with Upstream Activating Factor and with SWI/SNF subunits
Meilin Liu, Ailan Guo, Boris Boukhgalter, Kaitlin Van Den Heuvel, Matthew Tripp, Louise Pape
Nucleic Acids Res. 2002 Dec 15; 30(24): 5347–5359. doi: 10.1093/nar/gkf683
PMCID:
PMC140063
AbstractArticlePDF–562K
9.
Transcription Factor UAF, Expansion and Contraction of Ribosomal DNA (rDNA) Repeats, and RNA Polymerase Switch in Transcription of Yeast rDNA
Melanie Oakes, Imran Siddiqi, Loan Vu, John Aris, Masayasu Nomura
Mol Cell Biol. 1999 Dec; 19(12): 8559–8569. doi: 10.1128/mcb.19.12.8559
PMCID:
PMC84978
AbstractArticlePDF–3.5M
10.
TATA Binding Protein Can Stimulate Core-Directed Transcription by Yeast RNA Polymerase I
Pavel Aprikian, Beth Moorefield, Ronald H. Reeder
Mol Cell Biol. 2000 Jul; 20(14): 5269–5275. doi: 10.1128/mcb.20.14.5269-5275.2000
PMCID:
PMC85976
AbstractArticlePDF–1.2M
11.
Reconstitution of RNA Polymerase I Upstream Activating Factor and the Roles of Histones H3 and H4 in Complex Assembly
Marissa L. Smith, Weidong Cui, Ashleigh J. Jackobel, Nancy Walker-Kopp, Bruce A. Knutson
J Mol Biol. Author manuscript; available in PMC 2022 Dec 13.
Published in final edited form as: J Mol Biol. 2018 Mar 2; 430(5): 641–654. Published online 2018 Jan 31. doi: 10.1016/j.jmb.2018.01.003
PMCID:
PMC9746128
AbstractArticlePDF–1.4M
12.
An approach for isolation of mutants defective in 35S ribosomal RNA synthesis in Saccharomyces cerevisiae.
Y Nogi, L Vu, M Nomura
Proc Natl Acad Sci U S A. 1991 Aug 15; 88(16): 7026–7030. doi: 10.1073/pnas.88.16.7026
PMCID:
PMC52226
SummaryPage BrowsePDF–1.1M
13.
Molecular Topology of RNA Polymerase I Upstream Activation Factor
Bruce A. Knutson, Marissa L. Smith, Alana E. Belkevich, Aula M. Fakhouri
Mol Cell Biol. 2020 Jul; 40(13): e00056-20. Prepublished online 2020 Apr 6. Published online 2020 Jun 15. doi: 10.1128/MCB.00056-20
PMCID:
PMC7296216
AbstractArticlePDF–3.2M
14.
Nsi1 plays a significant role in the silencing of ribosomal DNA in Saccharomyces cerevisiae
Cheol Woong Ha, Min-Kyung Sung, Won-Ki Huh
Nucleic Acids Res. 2012 Jun; 40(11): 4892–4903. Published online 2012 Feb 22. doi: 10.1093/nar/gks188
PMCID:
PMC3367210
AbstractArticlePDF–1.8M
15.
Transcription of chromosomal rRNA genes by both RNA polymerase I and II in yeast uaf30 mutants lacking the 30 kDa subunit of transcription factor UAF
Imran N. Siddiqi, Jonathan A. Dodd, Loan Vu, Kristilyn Eliason, Melanie L. Oakes, John Keener, Roger Moore, Mary K. Young, Masayasu Nomura
EMBO J. 2001 Aug 15; 20(16): 4512–4521. doi: 10.1093/emboj/20.16.4512
PMCID:
PMC125573
AbstractArticlePDF–262K
16.
The Unfolded Protein Response Is Necessary but Not Sufficient to Compensate for Defects in Disulfide Isomerization
Jai-Hyun Kim, Yinsuo Zhao, Xuewen Pan, Xiangwei He, Hiram F. Gilbert
J Biol Chem. 2009 Apr 17; 284(16): 10400–10408. doi: 10.1074/jbc.M900377200
PMCID:
PMC2667727
AbstractArticlePDF–440K
17.
The conserved bromo-adjacent homology domain of yeast Orc1 functions in the selection of DNA replication origins within chromatin
Philipp Müller, Sookhee Park, Erika Shor, Dana J. Huebert, Christopher L. Warren, Aseem Z. Ansari, Michael Weinreich, Matthew L. Eaton, David M. MacAlpine, Catherine A. Fox
Genes Dev. 2010 Jul 1; 24(13): 1418–1433. doi: 10.1101/gad.1906410
PMCID:
PMC2895200
AbstractArticlePDF–1.0M
18.
Dynamics of the Putative RNA Helicase Spb4 during Ribosome Assembly in Saccharomyces cerevisiae
Juan José García-Gómez, Simon Lebaron, Carine Froment, Bernard Monsarrat, Yves Henry, Jesús de la Cruz
Mol Cell Biol. 2011 Oct; 31(20): 4156–4164. doi: 10.1128/MCB.05436-11
PMCID:
PMC3187284
AbstractArticlePDF–1.8M
19.
Association of yeast Upf1p with direct substrates of the NMD pathway
Marcus J. O. Johansson, Feng He, Phyllis Spatrick, Chunfang Li, Allan Jacobson
Proc Natl Acad Sci U S A. 2007 Dec 26; 104(52): 20872–20877. Published online 2007 Dec 17. doi: 10.1073/pnas.0709257105
PMCID:
PMC2409234
AbstractArticlePDF–864K
20.
The nucleotide sequence of Saccharomyces cerevisiae chromosome XII
M. Johnston, L. Hillier, L. Riles, other members of the Genome Sequencing Center, K. Albermann, B. André, W. Ansorge, V. Benes, M. Brückner, H. Delius, E. Dubois, A. Düsterhöft, K.-D. Entian, M. Floeth, A. Goffeau, U. Hebling, K. Heumann, D. Heuss-Neitzel, H. Hilbert, F. Hilger, K. Kleine, P. Kötter, E. J. Louis, F. Messenguy, H. W. Mewes, T. Miosga, D. Möstl, S. Müller-Auer, U. Nentwich, B. Obermaier, E. Piravandi, T. M. Pohl, D. Portetelle, B. Purnelle, S. Rechmann, M. Rieger, M. Rinke, M. Rose, M. Scharfe, B. Scherens, P. Scholler, C. Schwager, S. Schwarz, A. P. Underwood, L. A. Urrestarazu, M. Vandenbol, P. Verhasselt, F. Vierendeels, M Voet, G. Volckaert, H. Voss, R. Wambutt, E. Wedler, H. Wedler, F. K. Zimmermann, A. Zollner, J. Hani, J. D. Hoheisel
Nature. Author manuscript; available in PMC 2019 Jul 9.
Published in final edited form as: Nature. 1997 May 29; 387(6632 Suppl): 87–90.
PMCID:
PMC6615710
AbstractArticlePDF–424K

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