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Select item 66969841.

Ncl1-mediated metabolic rewiring critical during metabolic stress

Ajay Bhat, Rahul Chakraborty, Khushboo Adlakha, Ganesh Agam, Kausik Chakraborty, Shantanu Sengupta

Life Sci Alliance. 2019 Aug; 2(4): e201900360. Published online 2019 Aug 15. doi: 10.26508/lsa.201900360

PMCID:: PMC6696984

Abstract Article PDF–2.1M

Select item 18949322.

Cysteine of sequence motif VI is essential for nucleophilic catalysis by yeast tRNA m⁵C methyltransferase

Hélène Walbott, Clotilde Husson, Sylvie Auxilien, Béatrice Golinelli-Pimpaneau

RNA. 2007 Jul; 13(7): 967–973. doi: 10.1261/rna.515707

PMCID:: PMC1894932

Abstract Article PDF–359K

Select item 13698333.

Multisite-specific tRNA:m5C-methyltransferase (Trm4) in yeast Saccharomyces cerevisiae: identification of the gene and substrate specificity of the enzyme.

Y Motorin, H Grosjean

RNA. 1999 Aug; 5(8): 1105–1118. doi: 10.1017/s1355838299982201

PMCID:: PMC1369833

Summary PDF–976K

Select item 4194524.

Sequence–structure–function studies of tRNA:m⁵C methyltransferase Trm4p and its relationship to DNA:m⁵C and RNA:m⁵U methyltransferases

Janusz M. Bujnicki, Marcin Feder, Chastity L. Ayres, Kent L. Redman

Nucleic Acids Res. 2004; 32(8): 2453–2463. Published online 2004 Apr 30. doi: 10.1093/nar/gkh564

PMCID:: PMC419452

Abstract Article PDF–383K

Select item 16353295.

Identification of human tRNA:m⁵C methyltransferase catalysing intron-dependent m⁵C formation in the first position of the anticodon of the equation M1

Bartosz Brzezicha, Marcin Schmidt, Izabela Makałowska, Artur Jarmołowski, Joanna Pieńkowska, Zofia Szweykowska-Kulińska

Nucleic Acids Res. 2006 Nov; 34(20): 6034–6043. Published online 2006 Oct 27. doi: 10.1093/nar/gkl765

PMCID:: PMC1635329

Abstract Article PDF–351K

Select item 30029816.

A Quantitative Systems Approach Reveals Dynamic Control of tRNA Modifications during Cellular Stress

Clement T. Y. Chan, Madhu Dyavaiah, Michael S. DeMott, Koli Taghizadeh, Peter C. Dedon, Thomas J. Begley

PLoS Genet. 2010 Dec; 6(12): e1001247. Published online 2010 Dec 16. doi: 10.1371/journal.pgen.1001247

Correction in:: PLoS Genet. 2011 Feb; 7(2): 10.1371/annotation/6549d0b1-efde-4aa4-9cda-1cef43f66b30.

PMCID:: PMC3002981

Abstract Article PDF–405K

Select item 35351747.

Reprogramming of tRNA modifications controls the oxidative stress response by codon-biased translation of proteins

Clement T.Y. Chan, Yan Ling Joy Pang, Wenjun Deng, I. Ramesh Babu, Madhu Dyavaiah, Thomas J. Begley, Peter C. Dedon

Nat Commun. Author manuscript; available in PMC 2013 Jan 3.

Published in final edited form as: Nat Commun. 2012; 3: 937. Published online 2012 Jul 3. doi: 10.1038/ncomms1938

PMCID:: PMC3535174

Abstract Article PDF–1.3M

Select item 74735808.

Hypomodified tRNA in evolutionarily distant yeasts can trigger rapid tRNA decay to activate the general amino acid control response, but with different consequences

Thareendra De Zoysa, Eric M. Phizicky

PLoS Genet. 2020 Aug; 16(8): e1008893. Published online 2020 Aug 25. doi: 10.1371/journal.pgen.1008893

PMCID:: PMC7473580

Abstract Article PDF–4.8M

Select item 35430949.

tRNA^His 5-methylcytidine levels increase in response to several growth arrest conditions in Saccharomyces cerevisiae

Melanie A. Preston, Sonia D’Silva, Yoshiko Kon, Eric M. Phizicky

RNA. 2013 Feb; 19(2): 243–256. doi: 10.1261/rna.035808.112

PMCID:: PMC3543094

Abstract Article PDF–462K

Select item 344671110.

The yeast rapid tRNA decay pathway competes with elongation factor 1A for substrate tRNAs and acts on tRNAs lacking one or more of several modifications

Joshua M. Dewe, Joseph M. Whipple, Irina Chernyakov, Laura N. Jaramillo, Eric M. Phizicky

RNA. 2012 Oct; 18(10): 1886–1896. doi: 10.1261/rna.033654.112

PMCID:: PMC3446711

Abstract Article PDF–1.1M

Select item 610912411.

Collaboration of tRNA modifications and elongation factor eEF1A in decoding and nonsense suppression

Roland Klassen, Raffael Schaffrath

Sci Rep. 2018; 8: 12749. Published online 2018 Aug 24. doi: 10.1038/s41598-018-31158-2

PMCID:: PMC6109124

Abstract Article PDF–5.8M

Select item 237719112.

Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5′–3′ exonucleases Rat1 and Xrn1

Irina Chernyakov, Joseph M. Whipple, Lakmal Kotelawala, Elizabeth J. Grayhack, Eric M. Phizicky

Genes Dev. 2008 May 15; 22(10): 1369–1380. doi: 10.1101/gad.1654308

PMCID:: PMC2377191

Abstract Article PDF–869K

Select item 284662513.

Deciphering Protein Kinase Specificity through Large-Scale Analysis of Yeast Phosphorylation Site Motifs

Janine Mok, Philip M. Kim, Hugo Y. K. Lam, Stacy Piccirillo, Xiuqiong Zhou, Grace R. Jeschke, Douglas L. Sheridan, Sirlester A. Parker, Ved Desai, Miri Jwa, Elisabetta Cameroni, Hengyao Niu, Matthew Good, Attila Remenyi, Jia-Lin Nianhan Ma, Yi-Jun Sheu, Holly E. Sassi, Richelle Sopko, Clarence S. M. Chan, Claudio De Virgilio, Nancy M. Hollingsworth, Wendell A. Lim, David F. Stern, Bruce Stillman, Brenda J. Andrews, Mark B. Gerstein, Michael Snyder, Benjamin E. Turk

Sci Signal. Author manuscript; available in PMC 2011 Feb 16.

Published in final edited form as: Sci Signal. 2010 Feb 16; 3(109): ra12. Published online 2010 Feb 16. doi: 10.1126/scisignal.2000482

PMCID:: PMC2846625

Abstract Article PDF–2.4M

Select item 352255714.

Host co-factors of the retrovirus-like transposon Ty1

Jenni K Risler, Alison E Kenny, Ryan J Palumbo, Eric R Gamache, M Joan Curcio

Mob DNA. 2012; 3: 12. Published online 2012 Aug 2. doi: 10.1186/1759-8753-3-12

PMCID:: PMC3522557

Abstract Article PDF–2.7M

Select item 144879315.

Host Factors That Affect Ty3 Retrotransposition in Saccharomyces cerevisiae

Michael Aye, Becky Irwin, Nadejda Beliakova-Bethell, Eric Chen, Jennifer Garrus, Suzanne Sandmeyer

Genetics. 2004 Nov; 168(3): 1159–1176. doi: 10.1534/genetics.104.028126

PMCID:: PMC1448793

Abstract Article PDF–424K

Select item 244720316.

A Genomic Approach for the Identification and Classification of Genes Involved in Cell Wall Formation and its Regulation in Saccharomyces Cerevisiae

Piet W. J. de Groot, Cristina Ruiz, Carlos R. Vázquez de Aldana, Encarnación Dueňas, Víctor J. Cid, Francisco Del Rey, José M. Rodríquez-Peña, Pilar Pérez, Annemiek Andel, Julio Caubín, Javier Arroyo, Juan C. García, Concha Gil, María Molina, Luis J. García, César Nombela, Frans M. Klis

Comp Funct Genomics. 2001 Jun; 2(3): 124–142. doi: 10.1002/cfg.85

PMCID:: PMC2447203

Summary PDF–258K

Select item 316779717.

Genome-wide survey of yeast mutations leading to activation of the yeast cell integrity MAPK pathway: Novel insights into diverse MAPK outcomes

Patricia Arias, Sonia Díez-Muñiz, Raúl García, César Nombela, José M Rodríguez-Peña, Javier Arroyo

BMC Genomics. 2011; 12: 390. Published online 2011 Aug 2. doi: 10.1186/1471-2164-12-390

PMCID:: PMC3167797

Abstract Article PDF–2.9M

Select item 274994118.

Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics

Zhihua Li, Insuk Lee, Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte

PLoS Biol. 2009 Oct; 7(10): e1000213. Published online 2009 Oct 6. doi: 10.1371/journal.pbio.1000213

PMCID:: PMC2749941

Abstract Article PDF–7.2M

Select item 569178619.

The sensitivity of the yeast, Saccharomyces cerevisiae, to acetic acid is influenced by DOM34 and RPL36A

Bahram Samanfar, Kristina Shostak, Houman Moteshareie, Maryam Hajikarimlou, Sarah Shaikho, Katayoun Omidi, Mohsen Hooshyar, Daniel Burnside, Imelda Galván Márquez, Tom Kazmirchuk, Thet Naing, Paula Ludovico, Anna York-Lyon, Kama Szereszewski, Cindy Leung, Jennifer Yixin Jin, Rami Megarbane, Myron L. Smith, Mohan Babu, Martin Holcik, Ashkan Golshani

PeerJ. 2017; 5: e4037. Published online 2017 Nov 14. doi: 10.7717/peerj.4037

PMCID:: PMC5691786

Abstract Article PDF–1.0M

Select item 363892020.

A Conserved Deubiquitinating Enzyme Controls Cell Growth by Regulating RNA Polymerase I Stability

Lauren A. Richardson, Benjamin J. Reed, J. Michael Charette, Emily F. Freed, Eric K. Fredrickson, Melissa N. Locke, Susan J. Baserga, Richard G. Gardner

Cell Rep. Author manuscript; available in PMC 2013 Apr 29.

Published in final edited form as: Cell Rep. 2012 Aug 30; 2(2): 372–385. Published online 2012 Aug 16. doi: 10.1016/j.celrep.2012.07.009

PMCID:: PMC3638920

Abstract Article PDF–2.2M

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