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Items: 1 to 20 of 97

1.
Bayesian inference of origin firing time distributions, origin interference and licencing probabilities from Next Generation Sequencing data
Alina Bazarova, Conrad A Nieduszynski, Ildem Akerman, Nigel J Burroughs
Nucleic Acids Res. 2019 Mar 18; 47(5): 2229–2243. Published online 2019 Feb 14. doi: 10.1093/nar/gkz094
PMCID:
PMC6412128
AbstractArticlePDF–2.9M
2.
Kinetic Analysis Demonstrates a Requirement for the Rat1 Exonuclease in Cotranscriptional Pre-rRNA Cleavage
Konstantin Axt, Sarah L. French, Ann L. Beyer, David Tollervey
PLoS One. 2014; 9(2): e85703. Published online 2014 Feb 3. doi: 10.1371/journal.pone.0085703
PMCID:
PMC3911906
AbstractArticlePDF–3.2M
3.
The 5' end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site.
Y Henry, H Wood, J P Morrissey, E Petfalski, S Kearsey, D Tollervey
EMBO J. 1994 May 15; 13(10): 2452–2463. doi: 10.1002/j.1460-2075.1994.tb06530.x
PMCID:
PMC395111
SummaryPage BrowsePDF–3.4M
4.
Structure of the yeast TAP1 protein: dependence of transcription activation on the DNA context of the target gene.
T L Aldrich, G Di Segni, B L McConaughy, N J Keen, S Whelen, B D Hall
Mol Cell Biol. 1993 Jun; 13(6): 3434–3444. doi: 10.1128/mcb.13.6.3434
PMCID:
PMC359812
SummaryPage BrowsePDF–2.4M
5.
An essential yeast gene with homology to the exonuclease-encoding XRN1/KEM1 gene also encodes a protein with exoribonuclease activity.
M Kenna, A Stevens, M McCammon, M G Douglas
Mol Cell Biol. 1993 Jan; 13(1): 341–350. doi: 10.1128/mcb.13.1.341
PMCID:
PMC358913
SummaryPage BrowsePDF–2.3M
6.
Identification of a Novel Element Required for Processing of Intron-Encoded Box C/D Small Nucleolar RNAs in Saccharomyces cerevisiae
Tommaso Villa, Francesca Ceradini, Irene Bozzoni
Mol Cell Biol. 2000 Feb; 20(4): 1311–1320. doi: 10.1128/mcb.20.4.1311-1320.2000
PMCID:
PMC85272
AbstractArticlePDF–1019K
7.
Dismantling Promoter-driven RNA Polymerase II Transcription Complexes in Vitro by the Termination Factor Rat1
Erika L. Pearson, Claire L. Moore
J Biol Chem. 2013 Jul 5; 288(27): 19750–19759. Published online 2013 May 20. doi: 10.1074/jbc.M112.434985
PMCID:
PMC3707679
AbstractArticlePDF–1.3M
8.
Noncanonical transcript forms in yeast and their regulation during environmental stress
Oh Kyu Yoon, Rachel B. Brem
RNA. 2010 Jun; 16(6): 1256–1267. doi: 10.1261/rna.2038810
PMCID:
PMC2874177
AbstractArticlePDF–927K
9.
Torpedo Nuclease Rat1 Is Insufficient to Terminate RNA Polymerase II in Vitro
Stefan Dengl, Patrick Cramer
J Biol Chem. 2009 Aug 7; 284(32): 21270–21279. Published online 2009 Jun 17. doi: 10.1074/jbc.M109.013847
PMCID:
PMC2755851
AbstractArticlePDF–3.1M
10.
The final step in the formation of 25S rRNA in Saccharomyces cerevisiae is performed by 5'-->3' exonucleases.
T H Geerlings, J C Vos, H A Raué
RNA. 2000 Dec; 6(12): 1698–1703. doi: 10.1017/s1355838200001540
PMCID:
PMC1370040
SummaryPDF–696K
11.
TAP1, a yeast gene that activates the expression of a tRNA gene with a defective internal promoter.
G Di Segni, B L McConaughy, R A Shapiro, T L Aldrich, B D Hall
Mol Cell Biol. 1993 Jun; 13(6): 3424–3433. doi: 10.1128/mcb.13.6.3424
PMCID:
PMC359811
SummaryPage BrowsePDF–2.6M
12.
Transcription termination complex, Rtt103-Rai1-Rat1, regulates sub-telomeric transcripts in Saccharomyces cerevisiae
Kathirvel Ramalingam, Krishnaveni Mishra
RNA Biol. 2023; 20(1): 95–108. Published online 2023 Mar 27. doi: 10.1080/15476286.2023.2192552
PMCID:
PMC10054321
AbstractArticlePDF–7.5M
13.
Xrn1 is a deNADding enzyme modulating mitochondrial NAD-capped RNA
Sunny Sharma, Jun Yang, Ewa Grudzien-Nogalska, Jessica Shivas, Kelvin Y. Kwan, Megerditch Kiledjian
Nat Commun. 2022; 13: 889. Published online 2022 Feb 16. doi: 10.1038/s41467-022-28555-7
PMCID:
PMC8850482
AbstractArticlePDF–2.1M
14.
Gene-specific RNA pol II phosphorylation and the "CTD code"
Hyunmin Kim, Benjamin Erickson, Weifei Luo, David Seward, Joel H. Graber, David Pollock, Paul C. Megee, David L. Bentley
Nat Struct Mol Biol. Author manuscript; available in PMC 2011 Apr 1.
Published in final edited form as: Nat Struct Mol Biol. 2010 Oct; 17(10): 1279–1286. Published online 2010 Sep 12. doi: 10.1038/nsmb.1913
PMCID:
PMC3048030
AbstractArticlePDF–2.8M
15.
Efficient termination of transcription by RNA polymerase I requires the 5′ exonuclease Rat1 in yeast
Aziz El Hage, Michal Koper, Joanna Kufel, David Tollervey
Genes Dev. 2008 Apr 15; 22(8): 1069–1081. doi: 10.1101/gad.463708
PMCID:
PMC2335327
AbstractArticlePDF–968K
16.
The role of Rat1 in coupling mRNA 3′-end processing to transcription termination: implications for a unified allosteric–torpedo model
Weifei Luo, Arlen W. Johnson, David L. Bentley
Genes Dev. 2006 Apr 15; 20(8): 954–965. doi: 10.1101/gad.1409106
PMCID:
PMC1472303
AbstractArticlePDF–584K
17.
Rat1p and Rai1p function with the nuclear exosome in the processing and degradation of rRNA precursors
FENG FANG, SEASSON PHILLIPS, J. SCOTT BUTLER
RNA. 2005 Oct; 11(10): 1571–1578. doi: 10.1261/rna.2900205
PMCID:
PMC1370841
AbstractArticlePDF–448K
18.
The roles of endonucleolytic cleavage and exonucleolytic digestion in the 5′-end processing of S. cerevisiae box C/D snoRNAs
CHRISSIE YOUNG LEE, ALBERT LEE, GUILLAUME CHANFREAU
RNA. 2003 Nov; 9(11): 1362–1370. doi: 10.1261/rna.5126203
PMCID:
PMC1287058
AbstractArticlePDF–450K
19.
Lithium toxicity in yeast is due to the inhibition of RNA processing enzymes.
B Dichtl, A Stevens, D Tollervey
EMBO J. 1997 Dec 1; 16(23): 7184–7195. doi: 10.1093/emboj/16.23.7184
PMCID:
PMC1170319
SummaryPDF–574K
20.
Characterization of cDNA encoding mouse homolog of fission yeast dhp1+ gene: structural and functional conservation.
T Shobuike, S Sugano, T Yamashita, H Ikeda
Nucleic Acids Res. 1995 Feb 11; 23(3): 357–361. doi: 10.1093/nar/23.3.357
PMCID:
PMC306683
SummaryPage BrowsePDF–1.0M

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