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Select item 109544481.

Intrinsically disordered regions of the Msn2 transcription factor encode multiple functions using interwoven sequence grammars

Vladimir Mindel, Sagie Brodsky, Aileen Cohen, Wajd Manadre, Felix Jonas, Miri Carmi, Naama Barkai

Nucleic Acids Res. 2024 Mar 21; 52(5): 2260–2272. Published online 2023 Dec 18. doi: 10.1093/nar/gkad1191

PMCID:: PMC10954448

Abstract Article PDF–2.4M

Select item 105700362.

Yeast transcription factor Msn2 binds to G4 DNA

Duong Long Duy, Nayun Kim

Nucleic Acids Res. 2023 Oct 13; 51(18): 9643–9657. Published online 2023 Aug 24. doi: 10.1093/nar/gkad684

PMCID:: PMC10570036

Abstract Article PDF–2.1M

Select item 102502223.

The molecular grammar of protein disorder guiding genome-binding locations

Felix Jonas, Miri Carmi, Beniamin Krupkin, Joseph Steinberger, Sagie Brodsky, Tamar Jana, Naama Barkai

Nucleic Acids Res. 2023 Jun 9; 51(10): 4831–4844. Published online 2023 Mar 20. doi: 10.1093/nar/gkad184

PMCID:: PMC10250222

Abstract Article PDF–1.9M

Select item 62498694.

A constitutive active allele of the transcription factor Msn2 mimicking low PKA activity dictates metabolic remodeling in yeast

Vera Pfanzagl, Wolfram Görner, Martin Radolf, Alexandra Parich, Rainer Schuhmacher, Joseph Strauss, Wolfgang Reiter, Christoph Schüller

Mol Biol Cell. 2018 Nov 15; 29(23): 2848–2862. doi: 10.1091/mbc.E18-06-0389

PMCID:: PMC6249869

Abstract Article PDF–6.4M

Select item 59060805.

Heritable stress response dynamics revealed by single-cell genealogy

Meenakshi Chatterjee, Murat Acar

Sci Adv. 2018 Apr; 4(4): e1701775. Published online 2018 Apr 18. doi: 10.1126/sciadv.1701775

PMCID:: PMC5906080

Abstract Article PDF–1.7M

Select item 52216276.

Model-guided optogenetic study of PKA signaling in budding yeast

Jacob Stewart-Ornstein, Susan Chen, Rajat Bhatnagar, Jonathan S. Weissman, Hana El-Samad

Mol Biol Cell. 2017 Jan 1; 28(1): 221–227. doi: 10.1091/mbc.E16-06-0354

PMCID:: PMC5221627

Abstract Article PDF–1.5M

Select item 40728817.

Msn2 Coordinates a Stoichiometric Gene Expression Program

Jacob Stewart-Ornstein, Christopher Nelson, Joe DeRisi, Jonathan S. Weissman, Hana El-Samad

Curr Biol. Author manuscript; available in PMC 2014 Dec 2.

Published in final edited form as: Curr Biol. 2013 Dec 2; 23(23): 2336–2345. Published online 2013 Nov 7. doi: 10.1016/j.cub.2013.09.043

PMCID:: PMC4072881

Abstract Article PDF–1.1M

Select item 40271778.

A dynamic interplay of nucleosome and Msn2 binding regulates kinetics of gene activation and repression following stress

Nils Elfving, Răzvan V. Chereji, Vasudha Bharatula, Stefan Björklund, Alexandre V. Morozov, James R. Broach

Nucleic Acids Res. 2014 May 1; 42(9): 5468–5482. Published online 2014 Mar 5. doi: 10.1093/nar/gku176

PMCID:: PMC4027177

Abstract Article PDF–7.6M

Select item 37464869.

Tunable signal processing through modular control of transcription factor translocation

Nan Hao, Bogdan A. Budnik, Jeremy Gunawardena, Erin K. O’Shea

Science. Author manuscript; available in PMC 2013 Aug 19.

Published in final edited form as: Science. 2013 Jan 25; 339(6118): 460–464. doi: 10.1126/science.1227299

PMCID:: PMC3746486

Abstract Article PDF–1.2M

Select item 368170610.

Noise and interlocking signaling pathways promote distinct transcription factor dynamics in response to different stresses

Natalia Petrenko, Raˇzvan V. Chereji, Megan N. McClean, Alexandre V. Morozov, James R. Broach

Mol Biol Cell. 2013 Jun 15; 24(12): 2045–2057. doi: 10.1091/mbc.E12-12-0870

PMCID:: PMC3681706

Abstract Article PDF–5.4M

Select item 347465811.

Defining flexible vs. inherent promoter architectures: The importance of dynamics and environmental considerations

Dana J. Huebert, Audrey P. Gasch

Nucleus. 2012 Sep 1; 3(5): 399–403. doi: 10.4161/nucl.21172

PMCID:: PMC3474658

Abstract Article PDF–1.8M

Select item 270645312.

Stochastic modelling of nucleocytoplasmic oscillations of the transcription factor Msn2 in yeast

Didier Gonze, Michel Jacquet, Albert Goldbeter

J R Soc Interface. 2008 Aug 6; 5(Suppl 1): S95–S109. Published online 2008 May 20. doi: 10.1098/rsif.2008.0141.focus

PMCID:: PMC2706453

Abstract Article PDF–576K

Select item 257521813.

Identifying gene regulatory modules of heat shock response in yeast

Wei-Sheng Wu, Wen-Hsiung Li

BMC Genomics. 2008; 9: 439. Published online 2008 Sep 23. doi: 10.1186/1471-2164-9-439

PMCID:: PMC2575218

Abstract Article PDF–593K

Select item 113622114.

Expression cloning of a zinc-finger cyclic AMP-response-element-binding protein.

R M O'Brien, N Halmi, P E Stromstedt, R L Printz, D K Granner

Biochem J. 1995 Nov 15; 312(Pt 1): 17–21. doi: 10.1042/bj3120017

PMCID:: PMC1136221

Summary Page Browse PDF–1.1M

Select item 12534215.

Acute glucose starvation activates the nuclear localization signal of a stress-specific yeast transcription factor

Wolfram Görner, Erich Durchschlag, Julia Wolf, Elizabeth L. Brown, Gustav Ammerer, Helmut Ruis, Christoph Schüller

EMBO J. 2002 Jan 15; 21(1-2): 135–144. doi: 10.1093/emboj/21.1.135

PMCID:: PMC125342

Abstract Article PDF–305K

Select item 891804216.

Stress response factors drive regrowth of quiescent cells

Zheng Kuang, Hongkai Ji, Jef D. Boeke

Curr Genet. Author manuscript; available in PMC 2022 Mar 13.

Published in final edited form as: Curr Genet. 2018 Aug; 64(4): 807–810. Published online 2018 Feb 17. doi: 10.1007/s00294-018-0813-0

PMCID:: PMC8918042

Abstract Article PDF–143K

Select item 814983317.

Yeast cell fate control by temporal redundancy modulation of transcription factor paralogs

Yan Wu, Jiaqi Wu, Minghua Deng, Yihan Lin

Nat Commun. 2021; 12: 3145. Published online 2021 May 25. doi: 10.1038/s41467-021-23425-0

PMCID:: PMC8149833

Abstract Article PDF–1.7M

Select item 687429918.

Resolving noise–control conflict by gene duplication

Michal Chapal, Sefi Mintzer, Sagie Brodsky, Miri Carmi, Naama Barkai

PLoS Biol. 2019 Nov; 17(11): e3000289. Published online 2019 Nov 22. doi: 10.1371/journal.pbio.3000289

PMCID:: PMC6874299

Abstract Article PDF–3.7M

Select item 636845519.

Condensin-dependent chromatin compaction represses transcription globally during quiescence

Sarah G. Swygert, Seungsoo Kim, Xiaoying Wu, Tianhong Fu, Tsung-Han Hsieh, Oliver J. Rando, Robert N. Eisenman, Jay Shendure, Jeffrey N. McKnight, Toshio Tsukiyama

Mol Cell. Author manuscript; available in PMC 2020 Feb 7.

Published in final edited form as: Mol Cell. 2019 Feb 7; 73(3): 533–546.e4. Published online 2018 Dec 27. doi: 10.1016/j.molcel.2018.11.020

PMCID:: PMC6368455

Abstract Article PDF–4.8M

Select item 568297020.

The stress-regulatory transcription factors Msn2 and Msn4 regulate fatty acid oxidation in budding yeast

Praveen Kumar Rajvanshi, Madhuri Arya, Ram Rajasekharan

J Biol Chem. 2017 Nov 10; 292(45): 18628–18643. Published online 2017 Sep 18. doi: 10.1074/jbc.M117.801704

PMCID:: PMC5682970

Abstract Article PDF–4.3M

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