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Items: 1 to 20 of 119

1.
Active site conformational dynamics are coupled to catalysis in the mRNA decapping enzyme Dcp2
Robin A. Aglietti, Stephen N. Floor, Chris L. McClendon, Matthew P. Jacobson, John D. Gross
Structure. Author manuscript; available in PMC 2014 Sep 3.
Published in final edited form as: Structure. 2013 Sep 3; 21(9): 1571–1580. Published online 2013 Aug 1. doi: 10.1016/j.str.2013.06.021
PMCID:
PMC3769517
AbstractArticlePDF–2.1M
2.
A split active site couples cap recognition by Dcp2 to activation
Stephen N. Floor, Brittnee N. Jones, Gail A. Hernandez, John D. Gross
Nat Struct Mol Biol. Author manuscript; available in PMC 2011 Mar 1.
Published in final edited form as: Nat Struct Mol Biol. 2010 Sep; 17(9): 1096–1101. Published online 2010 Aug 15. doi: 10.1038/nsmb.1879
PMCID:
PMC2933276
AbstractArticlePDF–1.5M
3.
Co-translational mRNA decay in Saccharomyces cerevisiae
Wenqian Hu, Thomas J. Sweet, Sangpen Chamnongpol, Kristian E. Baker, Jeff Coller
Nature. Author manuscript; available in PMC 2010 Mar 10.
Published in final edited form as: Nature. 2009 Sep 10; 461(7261): 225–229. Published online 2009 Aug 23. doi: 10.1038/nature08265
PMCID:
PMC2745705
AbstractArticlePDF–867K
4.
Role of the essential yeast protein PSU1 in p6anscriptional enhancement by the ligand-dependent activation function AF-2 of nuclear receptors.
C Gaudon, P Chambon, R Losson
EMBO J. 1999 Apr 15; 18(8): 2229–2240. doi: 10.1093/emboj/18.8.2229
PMCID:
PMC1171306
SummaryPDF–619K
5.
The Multivalent Polyampholyte Domain of Nst1, a P-Body-Associated Saccharomyces cerevisiae Protein, Provides a Platform for Interacting with P-Body Components
Yoon-Jeong Choi, Yujin Lee, Yuxi Lin, Yunseok Heo, Young-Ho Lee, Kiwon Song
Int J Mol Sci. 2022 Jul; 23(13): 7380. Published online 2022 Jul 2. doi: 10.3390/ijms23137380
PMCID:
PMC9266425
AbstractArticlePDF–2.8M
6.
SPHINGOLIPIDS MEDIATE FORMATION OF mRNA PROCESSING BODIES DURING THE HEAT STRESS RESPONSE OF SACCHAROMYCES CEREVISIAE
L. Ashley Cowart, Jason L. Gandy, Baby Tholanikunnel, Yusuf A. Hannun
Biochem J. Author manuscript; available in PMC 2013 Oct 22.
Published in final edited form as: Biochem J. 2010 Oct 1; 431(1): 31–38. doi: 10.1042/BJ20100307
PMCID:
PMC3804835
AbstractArticlePDF–1.8M
7.
Identification and Analysis of the Interaction between Edc3 and Dcp2 in Saccharomyces cerevisiae
Yuriko Harigaya, Brittnee N. Jones, Denise Muhlrad, John D. Gross, Roy Parker
Mol Cell Biol. 2010 Mar; 30(6): 1446–1456. Published online 2010 Jan 19. doi: 10.1128/MCB.01305-09
PMCID:
PMC2832485
AbstractArticlePDF–1.1M
8.
Crystal structure of Dcp1p and its functional implications in mRNA decapping
Meipei She, Carolyn J Decker, Kumar Sundramurthy, Yuying Liu, Nan Chen, Roy Parker, Haiwei Song
Nat Struct Mol Biol. Author manuscript; available in PMC 2007 Oct 22.
Published in final edited form as: Nat Struct Mol Biol. 2004 Mar; 11(3): 249–256. Published online 2004 Feb 1. doi: 10.1038/nsmb730
PMCID:
PMC2040073
AbstractArticlePDF–2.3M
9.
A unique surface on Pat1 C-terminal domain directly interacts with Dcp2 decapping enzyme and Xrn1 5′–3′ mRNA exonuclease in yeast
Clément Charenton, Claudine Gaudon-Plesse, Zaineb Fourati, Valerio Taverniti, Régis Back, Olga Kolesnikova, Bertrand Séraphin, Marc Graille
Proc Natl Acad Sci U S A. 2017 Nov 7; 114(45): E9493–E9501. Published online 2017 Oct 24. doi: 10.1073/pnas.1711680114
PMCID:
PMC5692570
AbstractArticlePDF–1.5M
10.
mRNA localization to Pbodies in yeast is biphasic with many mRNAs captured in a late Bfr1pdependent wave
Clare E. Simpson, Jennifer Lui, Christopher J. Kershaw, Paul F. G. Sims, Mark P. Ashe
J Cell Sci. 2014 Mar 15; 127(6): 1254–1262. doi: 10.1242/jcs.139055
PMCID:
PMC3953815
AbstractArticle
11.
Identification of a quality control mechanism for mRNA 5’-end capping
Xinfu Jiao, Song Xiang, ChanSeok Oh, Charles E. Martin, Liang Tong, Megerditch Kiledjian
Nature. Author manuscript; available in PMC 2011 Mar 30.
Published in final edited form as: Nature. 2010 Sep 30; 467(7315): 608–611. Published online 2010 Aug 29. doi: 10.1038/nature09338
PMCID:
PMC2948066
AbstractArticlePDF–1.8M
12.
Dcp2 phosphorylation by Ste20 modulates stress granule assembly and mRNA decay in Saccharomyces cerevisiae
Je-Hyun Yoon, Eui-Ju Choi, Roy Parker
J Cell Biol. 2010 May 31; 189(5): 813–827. doi: 10.1083/jcb.200912019
PMCID:
PMC2878948
AbstractArticlePDF–3.5M
13.
Sbp1p Affects Translational Repression and Decapping in Saccharomyces cerevisiae
Scott P. Segal, Travis Dunckley, Roy Parker
Mol Cell Biol. 2006 Jul; 26(13): 5120–5130. doi: 10.1128/MCB.01913-05
Correction in:
Mol Cell Biol. 2007 Jan; 27(2): 789–790.
PMCID:
PMC1489156
AbstractArticlePDF–435K
14.
The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif.
T Dunckley, R Parker
EMBO J. 1999 Oct 1; 18(19): 5411–5422. doi: 10.1093/emboj/18.19.5411
PMCID:
PMC1171610
SummaryPDF–437K
15.
Human Dcp2: a catalytically active mRNA decapping enzyme located in specific cytoplasmic structures
Erwin van Dijk, Nicolas Cougot, Sylke Meyer, Sylvie Babajko, Elmar Wahle, Bertrand Séraphin
EMBO J. 2002 Dec 16; 21(24): 6915–6924. doi: 10.1093/emboj/cdf678
PMCID:
PMC139098
AbstractArticlePDF–306K
16.
Comparative parallel analysis of RNA ends identifies mRNA substrates of a tRNA splicing endonuclease-initiated mRNA decay pathway
Jennifer E. Hurtig, Michelle A. Steiger, Vinay K. Nagarajan, Tao Li, Ti-Chun Chao, Kuang-Lei Tsai, Ambro van Hoof
Proc Natl Acad Sci U S A. 2021 Mar 9; 118(10): e2020429118. Published online 2021 Mar 1. doi: 10.1073/pnas.2020429118
PMCID:
PMC7958239
AbstractArticlePDF–1.6M
17.
Two- and Three-Dimensional Tracking of MFA2 mRNA Molecules in Mating Yeast
Polina Geva, Konstantin Komoshvili, Stella Liberman-Aronov
Cells. 2020 Oct; 9(10): 2151. Published online 2020 Sep 23. doi: 10.3390/cells9102151
PMCID:
PMC7650813
AbstractArticlePDF–3.5M
18.
Conserved mRNA-granule component Scd6 targets Dhh1 to repress translation initiation and activates Dcp2-mediated mRNA decay in vivo
Quira Zeidan, Feng He, Fan Zhang, Hongen Zhang, Allan Jacobson, Alan G. Hinnebusch
PLoS Genet. 2018 Dec; 14(12): e1007806. Published online 2018 Dec 7. doi: 10.1371/journal.pgen.1007806
Correction in:
PLoS Genet. 2019 Jul; 15(7): e1008299.
PMCID:
PMC6307823
AbstractArticlePDF–4.4M
19.
P-Body Localization of the Hrr25/Casein Kinase 1 Protein Kinase Is Required for the Completion of Meiosis
Bo Zhang, Anna M. Butler, Qian Shi, Siyuan Xing, Paul K. Herman
Mol Cell Biol. 2018 Sep 1; 38(17): e00678-17. Prepublished online 2018 Jun 18. Published online 2018 Aug 15. doi: 10.1128/MCB.00678-17
PMCID:
PMC6094056
AbstractArticlePDF–6.7M
20.
High-resolution profiling of NMD targets in yeast reveals translational fidelity as a basis for substrate selection
Alper Celik, Richard Baker, Feng He, Allan Jacobson
RNA. 2017 May; 23(5): 735–748. doi: 10.1261/rna.060541.116
PMCID:
PMC5393182
AbstractArticlePDF–1.1M

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