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Items: 1 to 20 of 24

1.
Roles of the membrane-reentrant β-hairpin-like loop of RseP protease in selective substrate cleavage
Koichiro Akiyama, Shinya Mizuno, Yohei Hizukuri, Hiroyuki Mori, Terukazu Nogi, Yoshinori Akiyama
eLife. 2015; 4: e08928. Published online 2015 Oct 8. doi: 10.7554/eLife.08928
PMCID:
PMC4597795
AbstractArticlePDF–2.7M
2.
A Pair of Circularly Permutated PDZ Domains Control RseP, the S2P Family Intramembrane Protease of Escherichia coli
Kenji Inaba, Mamoru Suzuki, Ken-ichi Maegawa, Shuji Akiyama, Koreaki Ito, Yoshinori Akiyama
J Biol Chem. 2008 Dec 12; 283(50): 35042–35052. doi: 10.1074/jbc.M806603200
PMCID:
PMC3259892
AbstractArticlePDF–685K
3.
Post-liberation cleavage of signal peptides is catalyzed by the site-2 protease (S2P) in bacteria
Akira Saito, Yohei Hizukuri, Ei-ichi Matsuo, Shinobu Chiba, Hiroyuki Mori, Osamu Nishimura, Koreaki Ito, Yoshinori Akiyama
Proc Natl Acad Sci U S A. 2011 Aug 16; 108(33): 13740–13745. Published online 2011 Aug 2. doi: 10.1073/pnas.1108376108
PMCID:
PMC3158159
AbstractArticlePDF–844K
4.
EcfE, a new essential inner membrane protease: its role in the regulation of heat shock response in Escherichia coli
Claire Dartigalongue, Hannes Loferer, Satish Raina
EMBO J. 2001 Nov 1; 20(21): 5908–5918. doi: 10.1093/emboj/20.21.5908
PMCID:
PMC125713
AbstractArticlePDF–336K
5.
A family of membrane-embedded metalloproteases involved in regulated proteolysis of membrane-associated transcription factors
David Z. Rudner, Paul Fawcett, Richard Losick
Proc Natl Acad Sci U S A. 1999 Dec 21; 96(26): 14765–14770. doi: 10.1073/pnas.96.26.14765
PMCID:
PMC24722
AbstractArticlePDF–353K
6.
YaeL proteolysis of RseA is controlled by the PDZ domain of YaeL and a Gln-rich region of RseA
Kazue Kanehara, Koreaki Ito, Yoshinori Akiyama
EMBO J. 2003 Dec 1; 22(23): 6389–6398. doi: 10.1093/emboj/cdg602
PMCID:
PMC291843
AbstractArticlePDF–286K
7.
Instability of CII is needed for efficient switching between lytic and lysogenic development in bacteriophage 186
Iain M Murchland, Alexandra Ahlgren-Berg, Julian M J Pietsch, Alejandra Isabel, Ian B Dodd, Keith E Shearwin
Nucleic Acids Res. 2020 Dec 2; 48(21): 12030–12041. Published online 2020 Nov 19. doi: 10.1093/nar/gkaa1065
PMCID:
PMC7708051
AbstractArticlePDF–1.0M
8.
Cleavage of RseA by RseP requires a carboxyl-terminal hydrophobic amino acid following DegS cleavage
Xiaochun Li, Boyuan Wang, Lihui Feng, Hui Kang, Yang Qi, Jiawei Wang, Yigong Shi
Proc Natl Acad Sci U S A. 2009 Sep 1; 106(35): 14837–14842. Published online 2009 Aug 17. doi: 10.1073/pnas.0903289106
PMCID:
PMC2736447
AbstractArticlePDF–1.6M
9.
Rip exposed: How ectodomain shedding regulates the proteolytic processing of transmembrane substrates
Daniel R. Dries, Gang Yu
Proc Natl Acad Sci U S A. 2009 Sep 1; 106(35): 14737–14738. Published online 2009 Aug 26. doi: 10.1073/pnas.0908124106
PMCID:
PMC2736421
ArticlePDF–132K
10.
Fine-tuning of the Escherichia coli σE envelope stress response relies on multiple mechanisms to inhibit signal-independent proteolysis of the transmembrane anti-sigma factor, RseA
Irina L. Grigorova, Rachna Chaba, Hong Ji Zhong, Benjamin M. Alba, Virgil Rhodius, Christophe Herman, Carol A. Gross
Genes Dev. 2004 Nov 1; 18(21): 2686–2697. doi: 10.1101/gad.1238604
PMCID:
PMC525548
AbstractArticlePDF–272K
11.
DegS and YaeL participate sequentially in the cleavage of RseA to activate the σE-dependent extracytoplasmic stress response
Benjamin M. Alba, Jennifer A. Leeds, Christina Onufryk, Chi Zen Lu, Carol A. Gross
Genes Dev. 2002 Aug 15; 16(16): 2156–2168. doi: 10.1101/gad.1008902
PMCID:
PMC186436
AbstractArticlePDF–222K
12.
YaeL (EcfE) activates the σE pathway of stress response through a site-2 cleavage of anti-σE, RseA
Kazue Kanehara, Koreaki Ito, Yoshinori Akiyama
Genes Dev. 2002 Aug 15; 16(16): 2147–2155. doi: 10.1101/gad.1002302
PMCID:
PMC186437
AbstractArticlePDF–188K
13.
Regulation of ribonuclease E activity by the L4 ribosomal protein of Escherichia coli
Dharam Singh, Ssu-Jean Chang, Pei-Hsun Lin, Olga V. Averina, Vladimir R. Kaberdin, Sue Lin-Chao
Proc Natl Acad Sci U S A. 2009 Jan 20; 106(3): 864–869. Published online 2009 Jan 14. doi: 10.1073/pnas.0810205106
PMCID:
PMC2626609
AbstractArticlePDF–1014K
14.
Modulating substrate choice: the SspB adaptor delivers a regulator of the extracytoplasmic-stress response to the AAA+ protease ClpXP for degradation
Julia M. Flynn, Igor Levchenko, Robert T. Sauer, Tania A. Baker
Genes Dev. 2004 Sep 15; 18(18): 2292–2301. doi: 10.1101/gad.1240104
PMCID:
PMC517522
AbstractArticlePDF–216K
15.
Visualizing the proteome of Escherichia coli: an efficient and versatile method for labeling chromosomal coding DNA sequences (CDSs) with fluorescent protein genes
Rory M. Watt, Jing Wang, Meikid Leong, Hsiang-fu Kung, Kathryn S.E. Cheah, Depei Liu, Antoine Danchin, Jian-Dong Huang
Nucleic Acids Res. 2007 Mar; 35(6): e37. Published online 2007 Jan 31. doi: 10.1093/nar/gkl1158
PMCID:
PMC1874593
AbstractArticlePDF–5.3M
16.
Antibiotic Stress, Genetic Response and Altered Permeability of E. coli
Miguel Viveiros, Myrielle Dupont, Liliana Rodrigues, Isabel Couto, Anne Davin-Regli, Marta Martins, Jean-Marie Pagès, Leonard Amaral
PLoS One. 2007; 2(4): e365. Published online 2007 Apr 11. doi: 10.1371/journal.pone.0000365
PMCID:
PMC1838523
AbstractArticlePDF–290K
17.
Identification and functional analysis of ‘hypothetical’ genes expressed in Haemophilus influenzae
Eugene Kolker, Kira S. Makarova, Svetlana Shabalina, Alex F. Picone, Samuel Purvine, Ted Holzman, Tim Cherny, David Armbruster, Robert S. Munson, Jr, Grigory Kolesov, Dmitrij Frishman, Michael Y. Galperin
Nucleic Acids Res. 2004; 32(8): 2353–2361. Published online 2004 Apr 30. doi: 10.1093/nar/gkh555
PMCID:
PMC419445
AbstractArticlePDF–240K
18.
Intrinsic and extrinsic approaches for detecting genes in a bacterial genome.
M Borodovsky, K E Rudd, E V Koonin
Nucleic Acids Res. 1994 Nov 11; 22(22): 4756–4767. doi: 10.1093/nar/22.22.4756
PMCID:
PMC308528
SummaryPage BrowsePDF–2.5M
19.
MEROPS: the peptidase database
Neil D. Rawlings, Fraser R. Morton, Alan J. Barrett
Nucleic Acids Res. 2006 Jan 1; 34(Database issue): D270–D272. Published online 2005 Dec 28. doi: 10.1093/nar/gkj089
PMCID:
PMC1347452
AbstractArticlePDF–55K
20.
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori
Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050
PMCID:
PMC1681482
AbstractArticlePDF–400K

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