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Items: 1 to 20 of 79

1.
Thumb-domain dynamics modulate the functional repertoire of DNA-Polymerase IV (DinB)
Damasus C Okeke, Jens Lidman, Irena Matečko-Burmann, Björn M Burmann
Nucleic Acids Res. 2023 Jul 21; 51(13): 7036–7052. Published online 2023 Jun 1. doi: 10.1093/nar/gkad490
PMCID:
PMC10359629
AbstractArticlePDF–31M
2.
Residues in the fingers domain of the translesion DNA polymerase DinB enable its unique participation in error-prone double-strand break repair
Tommy F. Tashjian, Claudia Danilowicz, Anne-Elizabeth Molza, Brian H. Nguyen, Chantal Prévost, Mara Prentiss, Veronica G. Godoy
J Biol Chem. 2019 May 10; 294(19): 7588–7600. Published online 2019 Mar 14. doi: 10.1074/jbc.RA118.006233
PMCID:
PMC6514613
AbstractArticlePDF–3.1M
3.
DNA polymerase IV primarily operates outside of DNA replication forks in Escherichia coli
Sarah S. Henrikus, Elizabeth A. Wood, John P. McDonald, Michael M. Cox, Roger Woodgate, Myron F. Goodman, Antoine M. van Oijen, Andrew Robinson
PLoS Genet. 2018 Jan; 14(1): e1007161. Published online 2018 Jan 19. doi: 10.1371/journal.pgen.1007161
PMCID:
PMC5792023
AbstractArticlePDF–11M
4.
Persistent damaged bases in DNA allow mutagenic break repair in Escherichia coli
Jessica M. Moore, Raul Correa, Susan M. Rosenberg, P. J. Hastings
PLoS Genet. 2017 Jul; 13(7): e1006733. Published online 2017 Jul 20. doi: 10.1371/journal.pgen.1006733
PMCID:
PMC5542668
AbstractArticlePDF–3.8M
5.
Processing closely spaced lesions during Nucleotide Excision Repair triggers mutagenesis in E. coli
Régine Janel-Bintz, Rita L. Napolitano, Asako Isogawa, Shingo Fujii, Robert P. Fuchs
PLoS Genet. 2017 Jul; 13(7): e1006881. Published online 2017 Jul 7. doi: 10.1371/journal.pgen.1006881
PMCID:
PMC5521853
AbstractArticlePDF–3.0M
6.
A ΔdinB mutation that sensitizes Escherichia coli to the lethal effects of UV and X-radiation
Mei-Chong W. Lee, Magdalena Franco, Doris M. Vargas, Deborah A. Hudman, Steven J. White, Robert G. Fowler, Neil J. Sargentini
Mutat Res. Author manuscript; available in PMC 2015 May 1.
Published in final edited form as: Mutat Res. 2014 May-Jun; 0: 19–27. Published online 2014 Mar 20. doi: 10.1016/j.mrfmmm.2014.03.003
PMCID:
PMC4172556
AbstractArticlePDF–3.9M
7.
DNA polymerase IV mediates efficient and quick recovery of replication forks stalled at N2-dG adducts
Mio Ikeda, Asako Furukohri, Gaelle Philippin, Edward Loechler, Masahiro Tatsumi Akiyama, Tsutomu Katayama, Robert P. Fuchs, Hisaji Maki
Nucleic Acids Res. 2014 Sep 1; 42(13): 8461–8472. Published online 2014 Jun 21. doi: 10.1093/nar/gku547
PMCID:
PMC4117773
AbstractArticlePDF–5.6M
8.
Preferential D-loop Extension by a Translesion DNA Polymerase Underlies Error-Prone Recombination
Richard T. Pomerantz, Isabel Kurth, Myron F. Goodman, Mike O'Donnell
Nat Struct Mol Biol. Author manuscript; available in PMC 2013 Dec 1.
Published in final edited form as: Nat Struct Mol Biol. 2013 Jun; 20(6): 748–755. Published online 2013 May 19. doi: 10.1038/nsmb.2573
PMCID:
PMC3685420
AbstractArticlePDF–1.4M
9.
A strategically located serine residue is critical for the mutator activity of DNA polymerase IV from Escherichia coli
Amit Sharma, Jithesh Kottur, Naveen Narayanan, Deepak T. Nair
Nucleic Acids Res. 2013 May; 41(9): 5104–5114. Published online 2013 Mar 21. doi: 10.1093/nar/gkt146
PMCID:
PMC3643571
AbstractArticlePDF–6.5M
10.
A Single Residue Unique to DinB-Like Proteins Limits Formation of the Polymerase IV Multiprotein Complex in Escherichia coli
Tiziana M. Cafarelli, Thomas J. Rands, Ryan W. Benson, Pamela A. Rudnicki, Ida Lin, Veronica G. Godoy
J Bacteriol. 2013 Mar; 195(6): 1179–1193. doi: 10.1128/JB.01349-12
PMCID:
PMC3592004
AbstractArticlePDF–1.6M
11.
Urinary tract infection drives genome instability in uropathogenic Escherichia coli and necessitates translesion synthesis DNA polymerase IV for virulence
Damian Gawel, Patrick C Seed
Virulence. 2011 May-Jun; 2(3): 222–232. Published online 2011 May 1. doi: 10.4161/viru.2.3.16143
PMCID:
PMC3265773
AbstractArticlePDF–674K
12.
Genetic Requirement for Mutagenesis of the G[8,5-Me]T Cross-Link in Escherichia coli: DNA Polymerases IV and V Compete for Error-Prone Bypass
Paromita Raychaudhury, Ashis K. Basu
Biochemistry. 2011 Mar 29; 50(12): 2330–2338. Published online 2011 Feb 8. doi: 10.1021/bi102064z
PMCID:
PMC3062377
AbstractArticlePDF–1.9M
13.
A DinB variant reveals diverse physiological consequences of incomplete TLS extension by a Y-family DNA polymerase
Daniel F. Jarosz, Susan E. Cohen, James C. Delaney, John M. Essigmann, Graham C. Walker
Proc Natl Acad Sci U S A. 2009 Dec 15; 106(50): 21137–21142. Published online 2009 Nov 30. doi: 10.1073/pnas.0907257106
PMCID:
PMC2795518
AbstractArticlePDF–1.2M
14.
Interplay of DNA supercoiling and catenation during the segregation of sister duplexes
María Luisa Martínez-Robles, Guillaume Witz, Pablo Hernández, Jorge B. Schvartzman, Andrzej Stasiak, Dora B. Krimer
Nucleic Acids Res. 2009 Aug; 37(15): 5126–5137. Published online 2009 Jun 24. doi: 10.1093/nar/gkp530
PMCID:
PMC2731910
AbstractArticlePDF–6.5M
15.
Escherichia coli DNA Polymerase IV Contributes to Spontaneous Mutagenesis at Coding Sequences but not Microsatellite Alleles
Kimberly D. Jacob, Kristin A. Eckert
Mutat Res. Author manuscript; available in PMC 2009 Jun 29.
Published in final edited form as: Mutat Res. 2007 Jun 1; 619(1-2): 93–103. Published online 2007 Mar 2. doi: 10.1016/j.mrfmmm.2007.02.007
PMCID:
PMC2703455
AbstractArticlePDF–454K
16.
DinB Upregulation Is the Sole Role of the SOS Response in Stress-Induced Mutagenesis in Escherichia coli
Rodrigo S. Galhardo, Robert Do, Masami Yamada, Errol C. Friedberg, P. J. Hastings, Takehiko Nohmi, Susan M. Rosenberg
Genetics. 2009 May; 182(1): 55–68. doi: 10.1534/genetics.109.100735
PMCID:
PMC2674841
AbstractArticlePDF–1.1M
17.
Replication Bypass of Interstrand Cross-link Intermediates by Escherichia coli DNA Polymerase IV
Anuradha Kumari, Irina G. Minko, Michael B. Harbut, Steven E. Finkel, Myron F. Goodman, R. Stephen Lloyd
J Biol Chem. 2008 Oct 10; 283(41): 27433–27437. doi: 10.1074/jbc.M801237200
PMCID:
PMC2562078
AbstractArticlePDF–403K
18.
Efficient and accurate bypass of N2-(1-carboxyethyl)-2′-deoxyguanosine by DinB DNA polymerase in vitro and in vivo
Bifeng Yuan, Huachuan Cao, Yong Jiang, Haizheng Hong, Yinsheng Wang
Proc Natl Acad Sci U S A. 2008 Jun 24; 105(25): 8679–8684. Published online 2008 Jun 17. doi: 10.1073/pnas.0711546105
PMCID:
PMC2438377
AbstractArticlePDF–331K
19.
Involvement of Escherichia coli DNA Polymerase IV in Tolerance of Cytotoxic Alkylating DNA Lesions in Vivo
Ivana Bjedov, Chitralekha Nag Dasgupta, Dea Slade, Sophie Le Blastier, Marjorie Selva, Ivan Matic
Genetics. 2007 Jul; 176(3): 1431–1440. doi: 10.1534/genetics.107.072405
PMCID:
PMC1931539
AbstractArticlePDF–441K
20.
Role of DNA Polymerase IV in Escherichia coli SOS Mutator Activity
Wojciech Kuban, Magdalena Banach-Orlowska, Roel M. Schaaper, Piotr Jonczyk, Iwona J. Fijalkowska
J Bacteriol. 2006 Nov; 188(22): 7977–7980. Published online 2006 Sep 15. doi: 10.1128/JB.01088-06
PMCID:
PMC1636302
AbstractArticlePDF–61K

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