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Items: 1 to 20 of 42

1.
Bridging DNA contacts allow Dps from E. coli to condense DNA
Sneha Shahu, Natalia Vtyurina, Moumita Das, Anne S Meyer, Mahipal Ganji, Elio A Abbondanzieri
Nucleic Acids Res. 2024 May 8; 52(8): 4456–4465. Published online 2024 Apr 4. doi: 10.1093/nar/gkae223
PMCID:
PMC11077075
AbstractArticlePDF–1.5M
2.
Structural Rearrangement of Dps-DNA Complex Caused by Divalent Mg and Fe Cations
Liubov Dadinova, Roman Kamyshinsky, Yury Chesnokov, Andrey Mozhaev, Vladimir Matveev, Andrey Gruzinov, Alexander Vasiliev, Eleonora Shtykova
Int J Mol Sci. 2021 Jun; 22(11): 6056. Published online 2021 Jun 3. doi: 10.3390/ijms22116056
PMCID:
PMC8199988
AbstractArticlePDF–3.2M
3.
Multi-crystal data collection using synchrotron radiation as exemplified with low-symmetry crystals of Dps
Vladislav Kovalenko, Alexander Popov, Gianluca Santoni, Natalia Loiko, Ksenia Tereshkina, Eduard Tereshkin, Yurii Krupyanskii
Acta Crystallogr F Struct Biol Commun. 2020 Nov 1; 76(Pt 11): 568–576. Published online 2020 Oct 8. doi: 10.1107/S2053230X20012571
PMCID:
PMC7605109
AbstractArticlePDF–1.6M
4.
Electron cryomicroscopy with sub-Ångström specimen movement
Katerina Naydenova, Peipei Jia, Christopher J. Russo
Science. Author manuscript; available in PMC 2021 Apr 9.
Published in final edited form as: Science. 2020 Oct 9; 370(6513): 223–226. doi: 10.1126/science.abb7927
PMCID:
PMC7116250
AbstractArticlePDF–1.0M
5.
Rational disruption of the oligomerization of the mini-ferritin E. coli DPS through protein-protein interface mutation
Yu Zhang, Jing Fu, Sze Y Chee, Emmiline X W Ang, Brendan P Orner
Protein Sci. 2011 Nov; 20(11): 1907–1917. Published online 2011 Sep 6. doi: 10.1002/pro.731
PMCID:
PMC3267954
AbstractArticlePDF–3.7M
6.
Acid stress damage of DNA is prevented by Dps binding in Escherichia coli O157:H7
Kwang Cheol Jeong, Kai Foong Hung, David J Baumler, Jeffrey J Byrd, Charles W Kaspar
BMC Microbiol. 2008; 8: 181. Published online 2008 Oct 15. doi: 10.1186/1471-2180-8-181
PMCID:
PMC2588596
AbstractArticlePDF–717K
7.
DNA condensation and self-aggregation of Escherichia coli Dps are coupled phenomena related to the properties of the N-terminus
Pierpaolo Ceci, Sara Cellai, Elisabetta Falvo, Claudio Rivetti, Gian Luigi Rossi, Emilia Chiancone
Nucleic Acids Res. 2004; 32(19): 5935–5944. Published online 2004 Nov 8. doi: 10.1093/nar/gkh915
PMCID:
PMC528800
AbstractArticlePDF–442K
8.
Dps Protects Cells against Multiple Stresses during Stationary Phase
Sudha Nair, Steven E. Finkel
J Bacteriol. 2004 Jul; 186(13): 4192–4198. doi: 10.1128/JB.186.13.4192-4198.2004
PMCID:
PMC421617
AbstractArticlePDF–135K
9.
Fundamental structural units of the Escherichia coli nucleoid revealed by atomic force microscopy
Joongbaek Kim, Shige H. Yoshimura, Kohji Hizume, Ryosuke L. Ohniwa, Akira Ishihama, Kunio Takeyasu
Nucleic Acids Res. 2004; 32(6): 1982–1992. Published online 2004 Apr 1. doi: 10.1093/nar/gkh512
PMCID:
PMC390363
AbstractArticlePDF–479K
10.
The Ferritin-Like Dps Protein Is Required for Salmonella enterica Serovar Typhimurium Oxidative Stress Resistance and Virulence
Thomas A. Halsey, Andrés Vazquez-Torres, Daniel J. Gravdahl, Ferric C. Fang, Stephen J. Libby
Infect Immun. 2004 Feb; 72(2): 1155–1158. doi: 10.1128/IAI.72.2.1155-1158.2004
PMCID:
PMC321587
AbstractArticlePDF–280K
11.
Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps.
A Martinez, R Kolter
J Bacteriol. 1997 Aug; 179(16): 5188–5194. doi: 10.1128/jb.179.16.5188-5194.1997
PMCID:
PMC179379
SummaryPDF–2.0M
12.
Hypochlorous acid stress in Escherichia coli: resistance, DNA damage, and comparison with hydrogen peroxide stress.
S Dukan, D Touati
J Bacteriol. 1996 Nov; 178(21): 6145–6150. doi: 10.1128/jb.178.21.6145-6150.1996
PMCID:
PMC178483
SummaryPDF–285K
13.
Regulated phase transitions of bacterial chromatin: a non-enzymatic pathway for generic DNA protection
Daphna Frenkiel-Krispin, Smadar Levin-Zaidman, Eyal Shimoni, Sharon G. Wolf, Ellen J. Wachtel, Talmon Arad, Steven E. Finkel, Roberto Kolter, Abraham Minsky
EMBO J. 2001 Mar 1; 20(5): 1184–1191. doi: 10.1093/emboj/20.5.1184
PMCID:
PMC145506
AbstractArticlePDF–294K
14.
Analysis of Protein Synthesis Rates after Initiation of Chromosome Replication in Escherichia coli
Dorothée Bechtloff, Björn Grünenfelder, Thomas Åkerlund, Kurt Nordström
J Bacteriol. 1999 Oct; 181(20): 6292–6299. doi: 10.1128/jb.181.20.6292-6299.1999
PMCID:
PMC103762
AbstractArticlePDF–1.4M
15.
In Vivo Transcription of the Escherichia coli oxyR Regulon as a Function of Growth Phase and in Response to Oxidative Stress
Carmen Michán, Manuel Manchado, Gabriel Dorado, Carmen Pueyo
J Bacteriol. 1999 May; 181(9): 2759–2764. doi: 10.1128/jb.181.9.2759-2764.1999
PMCID:
PMC93716
AbstractArticlePDF–401K
16.
The Escherichia coli K-12 MntR Miniregulon Includes dps, Which Encodes the Major Stationary-Phase DNA-Binding Protein
Kaneyoshi Yamamoto, Akira Ishihama, Stephen J. W. Busby, David C. Grainger
J Bacteriol. 2011 Mar; 193(6): 1477–1480. Published online 2011 Jan 14. doi: 10.1128/JB.01230-10
PMCID:
PMC3067631
AbstractArticlePDF–1.1M
17.
Structural basis of N-end rule substrate recognition in Escherichia coli by the ClpAP adaptor protein ClpS
Verena J Schuenemann, Stephanie M Kralik, Reinhard Albrecht, Sukhdeep K Spall, Kaye N Truscott, David A Dougan, Kornelius Zeth
EMBO Rep. 2009 May; 10(5): 508–514. Published online 2009 Apr 17. doi: 10.1038/embor.2009.62
Correction in:
EMBO Rep. 2009 Jun; 10(6): 662.
PMCID:
PMC2680879
AbstractArticlePDF–1.1M
18.
Facile promoter deletion in Escherichia coli in response to leaky expression of very robust and benign proteins from common expression vectors
Martin Kawe, Uwe Horn, Andreas Plückthun
Microb Cell Fact. 2009; 8: 8. Published online 2009 Jan 26. doi: 10.1186/1475-2859-8-8
PMCID:
PMC2655282
AbstractArticlePDF–1003K
19.
Functional insights from structural predictions: analysis of the Escherichia coli genome.
L. Rychlewski, B. Zhang, A. Godzik
Protein Sci. 1999 Mar; 8(3): 614–624. doi: 10.1110/ps.8.3.614
PMCID:
PMC2144289
SummaryPDF–613K
20.
Emergence of Biofilm-Forming Subpopulations upon Exposure of Escherichia coli to Environmental Bacteriophages
Andrea Lacqua, Oskar Wanner, Teresa Colangelo, Maria Giovanna Martinotti, Paolo Landini
Appl Environ Microbiol. 2006 Jan; 72(1): 956–959. doi: 10.1128/AEM.72.1.956-959.2006
PMCID:
PMC1352295
AbstractArticlePDF–114K

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