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Select item 26671411.

A Structural Basis for the Regulatory Inactivation of DnaA

Qingping Xu, Daniel McMullan, Polat Abdubek, Tamara Astakhova, Dennis Carlton, Connie Chen, Hsiu-Ju Chiu, Thomas Clayton, Debanu Das, Marc C. Deller, Lian Duan, Marc-Andre Elsliger, Julie Feuerhelm, Joanna Hale, Gye Won Han, Lukasz Jaroszewski, Kevin K. Jin, Hope A. Johnson, Heath E. Klock, Mark W. Knuth, Piotr Kozbial, S. Sri Krishna, Abhinav Kumar, David Marciano, Mitchell D. Miller, Andrew T. Morse, Edward Nigoghossian, Amanda Nopakun, Linda Okach, Silvya Oommachen, Jessica Paulsen, Christina Puckett, Ron Reyes, Christopher L. Rife, Natasha Sefcovic, Christine Trame, Henry van den Bedem, Dana Weekes, Keith O. Hodgson, John Wooley, Ashley M. Deacon, Adam Godzik, Scott A. Lesley, Ian A. Wilson

J Mol Biol. Author manuscript; available in PMC 2010 Jan 16.

Published in final edited form as: J Mol Biol. 2009 Jan 16; 385(2): 368–380. Published online 2008 Oct 30. doi: 10.1016/j.jmb.2008.10.059

PMCID:: PMC2667141

Abstract Article PDF–4.3M

Select item 24466882.

New Adhesin of Enteroaggregative Escherichia coli Related to the Afa/Dr/AAF Family

Nadia Boisen, Carsten Struve, Flemming Scheutz, Karen A. Krogfelt, James P. Nataro

Infect Immun. 2008 Jul; 76(7): 3281–3292. Published online 2008 Apr 28. doi: 10.1128/IAI.01646-07

PMCID:: PMC2446688

Abstract Article PDF–361K

Select item 1501453.

Identification of a Novel Membrane-Associated Gene Product That Suppresses Toxicity of a TrfA Peptide from Plasmid RK2 and Its Relationship to the DnaA Host Initiation Protein

Peter D. Kim, Trevor Banack, Daniel M. Lerman, Jeremiah C. Tracy, Johanna Eltz Camara, Elliot Crooke, Don Oliver, William Firshein

J Bacteriol. 2003 Mar; 185(6): 1817–1824. doi: 10.1128/JB.185.6.1817-1824.2003

PMCID:: PMC150145

Abstract Article PDF–541K

Select item 34184614.

Evidence for Roles of the Escherichia coli Hda Protein Beyond RIDA

Jamie C. Baxter, Mark D. Sutton

Mol Microbiol. Author manuscript; available in PMC 2013 Aug 1.

Published in final edited form as: Mol Microbiol. 2012 Aug; 85(4): 648–668. Published online 2012 Jul 13. doi: 10.1111/j.1365-2958.2012.08129.x

PMCID:: PMC3418461

Abstract Article PDF–3.8M

Select item 24932845.

Modes of Overinitiation, dnaA Gene Expression, and Inhibition of Cell Division in a Novel Cold-Sensitive hda Mutant of Escherichia coli

Kazuyuki Fujimitsu, Masayuki Su'etsugu, Yoko Yamaguchi, Kensaku Mazda, Nisi Fu, Hironori Kawakami, Tsutomu Katayama

J Bacteriol. 2008 Aug; 190(15): 5368–5381. Published online 2008 May 23. doi: 10.1128/JB.00044-08

PMCID:: PMC2493284

Abstract Article PDF–826K

Select item 13170176.

Overexpression of the Hda DnaA-Related Protein in Escherichia coli Inhibits Multiplication, Affects Membrane Permeability, and Induces the SOS Response

Trevor Banack, Natasha Clauson, Nneka Ogbaa, Julian Villar, Donald Oliver, William Firshein

J Bacteriol. 2005 Dec; 187(24): 8507–8510. doi: 10.1128/JB.187.24.8507-8510.2005

PMCID:: PMC1317017

Article PDF–119K

Select item 11517427.

Deletion of the datA Site Does Not Affect Once-per-Cell-Cycle Timing but Induces Rifampin-Resistant Replication

Morigen, Felipe Molina, Kirsten Skarstad

J Bacteriol. 2005 Jun; 187(12): 3913–3920. doi: 10.1128/JB.187.12.3913-3920.2005

PMCID:: PMC1151742

Abstract Article PDF–199K

Select item 1540698.

Controlled Initiation of Chromosomal Replication in Escherichia coli Requires Functional Hda Protein

Johanna Eltz Camara, Kirsten Skarstad, Elliott Crooke

J Bacteriol. 2003 May; 185(10): 3244–3248. doi: 10.1128/JB.185.10.3244-3248.2003

PMCID:: PMC154069

Abstract Article PDF–476K

Select item 53971849.

Dynamic assembly of Hda and the sliding clamp in the regulation of replication licensing

Jin S. Kim, Michael T. Nanfara, Sundari Chodavarapu, Kyeong S. Jin, Vignesh M. P. Babu, Mohamed A. Ghazy, Scisung Chung, Jon M. Kaguni, Mark D. Sutton, Yunje Cho

Nucleic Acids Res. 2017 Apr 20; 45(7): 3888–3905. Published online 2017 Feb 7. doi: 10.1093/nar/gkx081

PMCID:: PMC5397184

Abstract Article PDF–11M

Select item 319073910.

DnaA Protein DNA-binding Domain Binds to Hda Protein to Promote Inter-AAA+ Domain Interaction Involved in Regulatory Inactivation of DnaA

Kenji Keyamura, Tsutomu Katayama

J Biol Chem. 2011 Aug 19; 286(33): 29336–29346. Published online 2011 Jun 27. doi: 10.1074/jbc.M111.233403

PMCID:: PMC3190739

Abstract Article PDF–3.5M

Select item 154004911.

The Plasmid RK2 Replication Initiator Protein (TrfA) Binds to the Sliding Clamp β Subunit of DNA Polymerase III: Implication for the Toxicity of a Peptide Derived from the Amino-Terminal Portion of 33-Kilodalton TrfA

Kritaya Kongsuwan, Peter Josh, Marc J. Picault, Gene Wijffels, Brian Dalrymple

J Bacteriol. 2006 Aug; 188(15): 5501–5509. doi: 10.1128/JB.00231-06

PMCID:: PMC1540049

Abstract Article PDF–479K

Select item 147955612.

Copy-number control of the Escherichia coli chromosome: a plasmidologist's view

Kurt Nordström, Santanu Dasgupta

EMBO Rep. 2006 May; 7(5): 484–489. doi: 10.1038/sj.embor.7400681

PMCID:: PMC1479556

Abstract Article PDF–173K

Select item 41575713.

Interaction of the Sliding Clamp β-Subunit and Hda, a DnaA-Related Protein

Mareike Kurz, Brian Dalrymple, Gene Wijffels, Kritaya Kongsuwan

J Bacteriol. 2004 Jun; 186(11): 3508–3515. doi: 10.1128/JB.186.11.3508-3515.2004

PMCID:: PMC415757

Abstract Article PDF–256K

Select item 271468614.

DnaAcos Hyperinitiates by Circumventing Regulatory Pathways that Control the Frequency of Initiation in Escherichia coli

Magdalena M. Felczak, Jon M. Kaguni

Mol Microbiol. Author manuscript; available in PMC 2009 Jul 23.

Published in final edited form as: Mol Microbiol. 2009 Jun; 72(6): 1348–1363. Published online 2009 Apr 30. doi: 10.1111/j.1365-2958.2009.06724.x

PMCID:: PMC2714686

Abstract Article PDF–1.3M

Select item 140972315.

A novel regulatory mechanism couples deoxyribonucleotide synthesis and DNA replication in Escherichia coli

Stéphanie Gon, Johanna E Camara, Hege K Klungsøyr, Elliott Crooke, Kirsten Skarstad, Jon Beckwith

EMBO J. 2006 Mar 8; 25(5): 1137–1147. Published online 2006 Feb 16. doi: 10.1038/sj.emboj.7600990

PMCID:: PMC1409723

Abstract Article PDF–317K

Select item 266229016.

Hda Monomerization by ADP Binding Promotes Replicase Clamp-mediated DnaA-ATP Hydrolysis

Masayuki Su'etsugu, Kenta Nakamura, Kenji Keyamura, Yuka Kudo, Tsutomu Katayama

J Biol Chem. 2008 Dec 26; 283(52): 36118–36131. doi: 10.1074/jbc.M803158200

PMCID:: PMC2662290

Abstract Article PDF–929K

Select item 14915917.

Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli

Jun-ichi Kato, Tsutomu Katayama

EMBO J. 2001 Aug 1; 20(15): 4253–4262. doi: 10.1093/emboj/20.15.4253

PMCID:: PMC149159

Abstract Article PDF–309K

Select item 136914318.

Hda inactivation of DnaA is the predominant mechanism preventing hyperinitiation of Escherichia coli DNA replication

Johanna E Camara, Adam M Breier, Therese Brendler, Stuart Austin, Nicholas R Cozzarelli, Elliott Crooke

EMBO Rep. 2005 Aug; 6(8): 736–741. Published online 2005 Jul 22. doi: 10.1038/sj.embor.7400467

PMCID:: PMC1369143

Abstract Article PDF–199K

Select item 153606219.

Hda-mediated inactivation of the DnaA protein and dnaA gene autoregulation act in concert to ensure homeostatic maintenance of the Escherichia coli chromosome

Leise Riber, Jan A. Olsson, Rasmus B. Jensen, Ole Skovgaard, Santanu Dasgupta, Martin G. Marinus, Anders Løbner-Olesen

Genes Dev. 2006 Aug 1; 20(15): 2121–2134. doi: 10.1101/gad.379506

PMCID:: PMC1536062

Abstract Article PDF–631K

Select item 179730920.

Genome-Wide Screening of Genes Required for Swarming Motility in Escherichia coli K-12

Tetsuyoshi Inoue, Ryuji Shingaki, Shotaro Hirose, Kaori Waki, Hirotada Mori, Kazuhiro Fukui

J Bacteriol. 2007 Feb; 189(3): 950–957. Published online 2006 Nov 22. doi: 10.1128/JB.01294-06

PMCID:: PMC1797309

Abstract Article PDF–141K

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