PMC Links for Gene (Select 947859) - PMC

Select item 111988181.

Positive charges promote the recognition of proteins by the chaperone SlyD from Escherichia coli

Daniel Lindemeier, Wenke Graubner, Denise Mehner-Breitfeld, Miroslav Malešević, Thomas Brüser

PLoS One. 2024; 19(6): e0305823. Published online 2024 Jun 25. doi: 10.1371/journal.pone.0305823

PMCID:: PMC11198818

Select item 32533752.

Metal selectivity of the E. coli nickel metallochaperone, SlyD

Harini Kaluarachchi, Judith F. Siebel, Supipi Kaluarachchi-Duffy, Sandra Krecisz, Duncan E. K. Sutherland, Martin J. Stillman, Deborah B. Zamble

Biochemistry. Author manuscript; available in PMC 2012 Dec 13.

Published in final edited form as: Biochemistry. 2011 Dec 13; 50(49): 10666–10677. Published online 2011 Nov 14. doi: 10.1021/bi2014882

PMCID:: PMC3253375

Abstract Article PDF–1.0M

Select item 21687483.

The Peptidyl-Prolyl Isomerase Activity of SlyD Is Not Required for Maturation of Escherichia coli Hydrogenase

Jie Wei Zhang, Michael R. Leach, Deborah B. Zamble

J Bacteriol. 2007 Nov; 189(21): 7942–7944. Published online 2007 Aug 24. doi: 10.1128/JB.00922-07

PMCID:: PMC2168748

Abstract Article PDF–122K

Select item 12204334.

Metal-dependent nucleotide binding to the Escherichia coli rotamase SlyD.

T Mitterauer, C Nanoff, H Ahorn, M Freissmuth, M Hohenegger

Biochem J. 1999 Aug 15; 342(Pt 1): 33–39. doi: 10.1042/0264-6021:3420033

PMCID:: PMC1220433

Summary PDF–227K

Select item 30970565.

RapA, SWI/SNF subunit of Escherichia coli RNA polymerase promotes the release of nascent RNA from transcription complexes

Brandon Yawn, Lin Zhang, Cameron Mura, Maxim V. Sukhodolets

Biochemistry. Author manuscript; available in PMC 2011 May 18.

Published in final edited form as: Biochemistry. 2009 Aug 25; 48(33): 7794–7806. doi: 10.1021/bi9004123

PMCID:: PMC3097056

Abstract Article PDF–2.8M

Select item 27871386.

Chaperone domains convert prolyl isomerases into generic catalysts of protein folding

Roman P. Jakob, Gabriel Zoldák, Tobias Aumüller, Franz X. Schmid

Proc Natl Acad Sci U S A. 2009 Dec 1; 106(48): 20282–20287. Published online 2009 Nov 17. doi: 10.1073/pnas.0909544106

PMCID:: PMC2787138

Abstract Article PDF–1.2M

Select item 182347.

Genetic evidence that the bacteriophage φX174 lysis protein inhibits cell wall synthesis

Thomas G. Bernhardt, William D. Roof, Ry Young

Proc Natl Acad Sci U S A. 2000 Apr 11; 97(8): 4297–4302. doi: 10.1073/pnas.97.8.4297

PMCID:: PMC18234

Abstract Article PDF–138K

Select item 75157288.

YdiV regulates Escherichia coli ferric uptake by manipulating the DNA-binding ability of Fur in a SlyD-dependent manner

Fengyu Zhang, Bingqing Li, Hongjie Dong, Min Chen, Shun Yao, Jingwen Li, Honghai Zhang, Xiangguo Liu, Hongwei Wang, Nannan Song, Kundi Zhang, Ning Du, Sujuan Xu, Lichuan Gu

Nucleic Acids Res. 2020 Sep 25; 48(17): 9571–9588. Published online 2020 Aug 19. doi: 10.1093/nar/gkaa696

PMCID:: PMC7515728

Abstract Article PDF–6.8M

Select item 32533749.

Escherichia coli SlyD, more than a Ni(II) reservoir

Harini Kaluarachchi, Jei Wei Zhang, Deborah B. Zamble

Biochemistry. Author manuscript; available in PMC 2012 Dec 20.

Published in final edited form as: Biochemistry. 2011 Dec 20; 50(50): 10761–10763. Published online 2011 Nov 18. doi: 10.1021/bi201590d

PMCID:: PMC3253374

Abstract Article PDF–476K

Select item 323488110.

Protein Interactions and Localization of the Escherichia coli Accessory Protein HypA during Nickel Insertion to [NiFe] Hydrogenase

Kim C. Chan Chung, Deborah B. Zamble

J Biol Chem. 2011 Dec 16; 286(50): 43081–43090. Published online 2011 Oct 20. doi: 10.1074/jbc.M111.290726

PMCID:: PMC3234881

Abstract Article PDF–1.1M

Select item 264804111.

Life, Death, Differentiation, and the Multicellularity of Bacteria

Susan M. Rosenberg

PLoS Genet. 2009 Mar; 5(3): e1000418. Published online 2009 Mar 13. doi: 10.1371/journal.pgen.1000418

PMCID:: PMC2648041

Article PDF–108K

Select item 264683212.

Escherichia coli MazF Leads to the Simultaneous Selective Synthesis of Both “Death Proteins” and “Survival Proteins”

Shahar Amitai, Ilana Kolodkin-Gal, Mirit Hananya-Meltabashi, Ayelet Sacher, Hanna Engelberg-Kulka

PLoS Genet. 2009 Mar; 5(3): e1000390. Published online 2009 Mar 13. doi: 10.1371/journal.pgen.1000390

PMCID:: PMC2646832

Abstract Article PDF–1.4M

Select item 37431713.

Proteomic analysis of thioredoxin-targeted proteins in Escherichia coli

Jaya K. Kumar, Stanley Tabor, Charles C. Richardson

Proc Natl Acad Sci U S A. 2004 Mar 16; 101(11): 3759–3764. Published online 2004 Mar 2. doi: 10.1073/pnas.0308701101

PMCID:: PMC374317

Abstract Article PDF–397K

Select item 18752814.

Factors Influencing the Identification of Transcription Factor Binding Sites by Cross-Species Comparison

Lee Ann McCue, William Thompson, C. Steven Carmack, Charles E. Lawrence

Genome Res. 2002 Oct; 12(10): 1523–1532. doi: 10.1101/gr.323602

PMCID:: PMC187528

Abstract Article PDF–192K

Select item 145705215.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 267261416.

Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

Pingzhao Hu, Sarath Chandra Janga, Mohan Babu, J. Javier Díaz-Mejía, Gareth Butland, Wenhong Yang, Oxana Pogoutse, Xinghua Guo, Sadhna Phanse, Peter Wong, Shamanta Chandran, Constantine Christopoulos, Anaies Nazarians-Armavil, Negin Karimi Nasseri, Gabriel Musso, Mehrab Ali, Nazila Nazemof, Veronika Eroukova, Ashkan Golshani, Alberto Paccanaro, Jack F Greenblatt, Gabriel Moreno-Hagelsieb, Andrew Emili

PLoS Biol. 2009 Apr; 7(4): e1000096. Published online 2009 Apr 28. doi: 10.1371/journal.pbio.1000096

PMCID:: PMC2672614

Abstract Article

Select item 229217717.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 168148118.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 132520019.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

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