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Items: 1 to 20 of 74

1.
Recipient UvrD helicase is involved in single- to double-stranded DNA conversion during conjugative plasmid transfer
Minjia Shen, Kelly Goldlust, Sandra Daniel, Christian Lesterlin, Yoshiharu Yamaichi
Nucleic Acids Res. 2023 Apr 11; 51(6): 2790–2799. Published online 2023 Feb 11. doi: 10.1093/nar/gkad075
PMCID:
PMC10085688
AbstractArticlePDF–3.6M
2.
Free-energy simulations reveal molecular mechanism for functional switch of a DNA helicase
Wen Ma, Kevin D Whitley, Yann R Chemla, Zaida Luthey-Schulten, Klaus Schulten
eLife. 2018; 7: e34186. Published online 2018 Apr 17. doi: 10.7554/eLife.34186
PMCID:
PMC5973834
AbstractArticlePDF–4.9M
3.
Large domain movements upon UvrD dimerization and helicase activation
Binh Nguyen, Yerdos Ordabayev, Joshua E. Sokoloski, Elizabeth Weiland, Timothy M. Lohman
Proc Natl Acad Sci U S A. 2017 Nov 14; 114(46): 12178–12183. Published online 2017 Oct 30. doi: 10.1073/pnas.1712882114
PMCID:
PMC5699075
AbstractArticlePDF–1.5M
4.
Modulation of Escherichia coli UvrD Single-Stranded DNA Translocation by DNA Base Composition
Eric J. Tomko, Timothy M. Lohman
Biophys J. 2017 Oct 3; 113(7): 1405–1415. Published online 2017 Oct 3. doi: 10.1016/j.bpj.2017.08.023
PMCID:
PMC5627390
AbstractArticlePDF–1.1M
5.
Direct observation of structure-function relationship in a nucleic acid processing enzyme
Matthew J. Comstock, Kevin D. Whitley, Haifeng Jia, Joshua Sokoloski, Timothy M. Lohman, Taekjip Ha, Yann R. Chemla
Science. Author manuscript; available in PMC 2015 Oct 17.
Published in final edited form as: Science. 2015 Apr 17; 348(6232): 352–354. Published online 2015 Apr 16. doi: 10.1126/science.aaa0130
PMCID:
PMC4424897
AbstractArticlePDF–333K
6.
The UvrD303 Hyper-helicase Exhibits Increased Processivity
Matthew J. Meiners, Kambiz Tahmaseb, Steven W. Matson
J Biol Chem. 2014 Jun 13; 289(24): 17100–17110. Published online 2014 May 5. doi: 10.1074/jbc.M114.565309
PMCID:
PMC4059151
AbstractArticlePDF–1.5M
7.
Direct imaging of single UvrD helicase dynamics on long single-stranded DNA
Kyung Suk Lee, Hamza Balci, Haifeng Jia, Timothy M. Lohman, Taekjip Ha
Nat Commun. 2013 May 21; 4: 1878. Published online 2013 May 21. doi: 10.1038/ncomms2882
PMCID:
PMC3674262
AbstractArticlePDF–2.0M
8.
Single stranded DNA translocation of E. coli UvrD monomer is tightly coupled to ATP hydrolysis
Eric J. Tomko, Christopher J. Fischer, Timothy M. Lohman
J Mol Biol. Author manuscript; available in PMC 2013 Apr 20.
Published in final edited form as: J Mol Biol. 2012 Apr 20; 418(1-2): 32–46. Published online 2012 Feb 14. doi: 10.1016/j.jmb.2012.02.013
PMCID:
PMC3311787
AbstractArticlePDF–3.1M
9.
Pathways of Resistance to Thymineless Death in Escherichia coli and the Function of UvrD
Natalie C. Fonville, Zalman Vaksman, Jessica DeNapoli, P. J. Hastings, Susan M. Rosenberg
Genetics. 2011 Sep; 189(1): 23–36. doi: 10.1534/genetics.111.130161
PMCID:
PMC3176125
AbstractArticlePDF–1.8M
10.
Rotations of the 2B Sub-domain of E. coli UvrD Helicase/Translocase Coupled to Nucleotide and DNA Binding
Haifeng Jia, Sergey Korolev, Anita Niedziela-Majka, Nasib K. Maluf, George H. Gauss, Sua Myong, Taekjip Ha, Gabriel Waksman, Timothy M. Lohman
J Mol Biol. Author manuscript; available in PMC 2012 Aug 19.
Published in final edited form as: J Mol Biol. 2011 Aug 19; 411(3): 633–648. Published online 2011 Jun 17. doi: 10.1016/j.jmb.2011.06.019
Correction in:
volume 418 on page 264
PMCID:
PMC3146578
AbstractArticlePDF–2.8M
11.
5′-Single-stranded/duplex DNA junctions are loading sites for E. coli UvrD translocase
Eric J Tomko, Haifeng Jia, Jeehae Park, Nasib K Maluf, Taekjip Ha, Timothy M Lohman
EMBO J. 2010 Nov 17; 29(22): 3826–3839. Published online 2010 Sep 28. doi: 10.1038/emboj.2010.242
PMCID:
PMC2989100
AbstractArticlePDF–2.4M
12.
Modulation of UvrD Helicase Activity by Covalent DNA-Protein Cross-links
Anuradha Kumari, Irina G. Minko, Rebecca L. Smith, R. Stephen Lloyd, Amanda K. McCullough
J Biol Chem. 2010 Jul 9; 285(28): 21313–21322. Published online 2010 May 4. doi: 10.1074/jbc.M109.078964
PMCID:
PMC2898412
AbstractArticlePDF–1.9M
13.
UvrD303, a Hyperhelicase Mutant That Antagonizes RecA-Dependent SOS Expression by a Mechanism That Depends on Its C Terminus
Richard C. Centore, Michael C. Leeson, Steven J. Sandler
J Bacteriol. 2009 Mar; 191(5): 1429–1438. Published online 2008 Dec 12. doi: 10.1128/JB.01415-08
PMCID:
PMC2648194
AbstractArticlePDF–455K
14.
Impediment of E. coli UvrD by DNA-destabilizing force reveals a strained-inchworm mechanism of DNA unwinding
Bo Sun, Kong-Ji Wei, Bo Zhang, Xing-Hua Zhang, Shuo-Xing Dou, Ming Li, Xu Guang Xi
EMBO J. 2008 Dec 17; 27(24): 3279–3287. Published online 2008 Nov 13. doi: 10.1038/emboj.2008.240
PMCID:
PMC2609735
AbstractArticlePDF–947K
15.
A Non-uniform Stepping Mechanism for E. coli UvrD Monomer Translocation along Single Stranded DNA
Eric J. Tomko, Christopher J. Fischer, Anita Niedziela-Majka, Timothy M. Lohman
Mol Cell. Author manuscript; available in PMC 2007 Oct 24.
Published in final edited form as: Mol Cell. 2007 May 11; 26(3): 335–347. doi: 10.1016/j.molcel.2007.03.024
PMCID:
PMC2041850
AbstractArticlePDF–1.3M
16.
Regulation of the Escherichia coli uvrD gene in vivo.
H M Arthur, D R Cavanagh, P W Finch, P T Emmerson
J Bacteriol. 1987 Aug; 169(8): 3435–3440. doi: 10.1128/jb.169.8.3435-3440.1987
PMCID:
PMC212414
SummaryPage BrowsePDF–1.2M
17.
Mutations in uvrD induce the SOS response in Escherichia coli.
N Ossanna, D W Mount
J Bacteriol. 1989 Jan; 171(1): 303–307. doi: 10.1128/jb.171.1.303-307.1989
PMCID:
PMC209587
SummaryPage BrowsePDF–1.0M
18.
Construction and analysis of deletions in the structural gene (uvrD) for DNA helicase II of Escherichia coli.
B K Washburn, S R Kushner
J Bacteriol. 1991 Apr; 173(8): 2569–2575. doi: 10.1128/jb.173.8.2569-2575.1991
PMCID:
PMC207822
SummaryPage BrowsePDF–1.4M
19.
Characterization of DNA helicase II from a uvrD252 mutant of Escherichia coli.
B K Washburn, S R Kushner
J Bacteriol. 1993 Jan; 175(2): 341–350. doi: 10.1128/jb.175.2.341-350.1993
PMCID:
PMC196147
SummaryPage BrowsePDF–1.9M
20.
Conserved motifs II to VI of DNA helicase II from Escherichia coli are all required for biological activity.
G Zhang, E Deng, L R Baugh, C M Hamilton, V F Maples, S R Kushner
J Bacteriol. 1997 Dec; 179(23): 7544–7550. doi: 10.1128/jb.179.23.7544-7550.1997
PMCID:
PMC179708
SummaryPDF–213K

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