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Select item 69420501.

Human NORs, comprising rDNA arrays and functionally conserved distal elements, are located within dynamic chromosomal regions

Marjolein van Sluis, Michael Ó Gailín, Joseph G.W. McCarter, Hazel Mangan, Alice Grob, Brian McStay

Genes Dev. 2019 Dec 1; 33(23-24): 1688–1701. doi: 10.1101/gad.331892.119

PMCID:: PMC6942050

Abstract Article PDF–4.2M

Select item 66270402.

Cell-Free, Embryo-Specific sncRNA as a Molecular Biological Bridge between Patient Fertility and IVF Efficiency

Angelika V. Timofeeva, Vitaliy V. Chagovets, Yulia S. Drapkina, Nataliya P. Makarova, Elena A. Kalinina, Gennady T. Sukhikh

Int J Mol Sci. 2019 Jun; 20(12): 2912. Published online 2019 Jun 14. doi: 10.3390/ijms20122912

PMCID:: PMC6627040

Abstract Article PDF–3.7M

Select item 64399663.

reactIDR: evaluation of the statistical reproducibility of high-throughput structural analyses towards a robust RNA structure prediction

Risa Kawaguchi, Hisanori Kiryu, Junichi Iwakiri, Jun Sese

BMC Bioinformatics. 2019; 20(Suppl 3): 130. Published online 2019 Mar 29. doi: 10.1186/s12859-019-2645-4

PMCID:: PMC6439966

Abstract Article PDF–2.8M

Select item 62811884.

The conservation landscape of the human ribosomal RNA gene repeats

Saumya Agrawal, Austen R. D. Ganley

PLoS One. 2018; 13(12): e0207531. Published online 2018 Dec 5. doi: 10.1371/journal.pone.0207531

PMCID:: PMC6281188

Abstract Article PDF–2.8M

Select item 61021325.

Cell clustering mediated by the adhesion protein PVRL4 is necessary for α6β4 integrin–promoted ferroptosis resistance in matrix-detached cells

Caitlin W. Brown, John J. Amante, Arthur M. Mercurio

J Biol Chem. 2018 Aug 17; 293(33): 12741–12748. Published online 2018 Jun 22. doi: 10.1074/jbc.RA118.003017

PMCID:: PMC6102132

Abstract Article PDF–1.9M

Select item 60169026.

An optimized methodology for whole genome sequencing of RNA respiratory viruses from nasopharyngeal aspirates

Stephanie Goya, Laura E. Valinotto, Estefania Tittarelli, Gabriel L. Rojo, Mercedes S. Nabaes Jodar, Alexander L. Greninger, Jonathan J. Zaiat, Marcelo A. Marti, Alicia S. Mistchenko, Mariana Viegas

PLoS One. 2018; 13(6): e0199714. Published online 2018 Jun 25. doi: 10.1371/journal.pone.0199714

PMCID:: PMC6016902

Abstract Article PDF–1.6M

Select item 57726237.

Malaria infected red blood cells release small regulatory RNAs through extracellular vesicles

Kehinde Adebayo Babatunde, Smart Mbagwu, María Andrea Hernández-Castañeda, Swamy R. Adapa, Michael Walch, Luis Filgueira, Laurent Falquet, Rays H. Y. Jiang, Ionita Ghiran, Pierre-Yves Mantel

Sci Rep. 2018; 8: 884. Published online 2018 Jan 17. doi: 10.1038/s41598-018-19149-9

PMCID:: PMC5772623

Abstract Article PDF–6.2M

Select item 57653588.

A Deconvolution Protocol for ChIP-Seq Reveals Analogous Enhancer Structures on the Mouse and Human Ribosomal RNA Genes

Jean-Clement Mars, Marianne Sabourin-Felix, Michel G. Tremblay, Tom Moss

G3 (Bethesda) 2018 Jan; 8(1): 303–314. Published online 2017 Nov 20. doi: 10.1534/g3.117.300225

PMCID:: PMC5765358

Abstract Article PDF–3.1M

Select item 57378799.

Oxidative stress rapidly stabilizes promoter-proximal paused Pol II across the human genome

Kyle A. Nilson, Christine K. Lawson, Nicholas J. Mullen, Christopher B. Ball, Benjamin M. Spector, Jeffery L. Meier, David H. Price

Nucleic Acids Res. 2017 Nov 2; 45(19): 11088–11105. Published online 2017 Aug 18. doi: 10.1093/nar/gkx724

PMCID:: PMC5737879

Abstract Article PDF–4.9M

Select item 563386910.

The presence of residual gold nanoparticles in samples interferes with the RT-qPCR assay used for gene expression profiling

Natasha M. Sanabria, Mary Gulumian

J Nanobiotechnology. 2017; 15: 72. Published online 2017 Oct 10. doi: 10.1186/s12951-017-0299-9

PMCID:: PMC5633869

Abstract Article PDF–1.9M

Select item 547261911.

Validation of optimal reference genes for quantitative real time PCR in muscle and adipose tissue for obesity and diabetes research

Lester J. Perez, Liliam Rios, Purvi Trivedi, Kenneth D’Souza, Andrew Cowie, Carine Nzirorera, Duncan Webster, Keith Brunt, Jean-Francois Legare, Ansar Hassan, Petra C. Kienesberger, Thomas Pulinilkunnil

Sci Rep. 2017; 7: 3612. Published online 2017 Jun 15. doi: 10.1038/s41598-017-03730-9

PMCID:: PMC5472619

Abstract Article PDF–2.1M

Select item 538167012.

Ribosomal RNA Genes Contribute to the Formation of Pseudogenes and Junk DNA in the Human Genome

Brent M. Robicheau, Edward Susko, Amye M. Harrigan, Marlene Snyder

Genome Biol Evol. 2017 Feb; 9(2): 380–397. Published online 2017 Feb 15. doi: 10.1093/gbe/evw307

PMCID:: PMC5381670

Abstract Article PDF–1.6M

Select item 435639113.

Osteopontin-c mediates the upregulation of androgen responsive genes in LNCaP cells through PI3K/Akt and androgen receptor signaling

TATIANA MARTINS TILLI, LUCIANA BUENO FERREIRA, ETEL RODRIGUES PEREIRA GIMBA

Oncol Lett. 2015 Apr; 9(4): 1845–1850. Published online 2015 Feb 6. doi: 10.3892/ol.2015.2939

PMCID:: PMC4356391

Abstract Article PDF–483K

Select item 415934814.

RNA-Seq of the Nucleolus Reveals Abundant SNORD44-Derived Small RNAs

Baoyan Bai, Srinivasan Yegnasubramanian, Sarah J. Wheelan, Marikki Laiho

PLoS One. 2014; 9(9): e107519. Published online 2014 Sep 9. doi: 10.1371/journal.pone.0107519

PMCID:: PMC4159348

Abstract Article PDF–5.6M

Select item 397145415.

Mapping the Human Reference Genome’s Missing Sequence by Three-Way Admixture in Latino Genomes

Giulio Genovese, Robert E. Handsaker, Heng Li, Eimear E. Kenny, Steven A. McCarroll

Am J Hum Genet. 2013 Sep 5; 93(3): 411–421. doi: 10.1016/j.ajhg.2013.07.002

PMCID:: PMC3971454

Abstract Article PDF–1.0M

Select item 384777116.

The shared genomic architecture of human nucleolar organizer regions

Ioanna Floutsakou, Saumya Agrawal, Thong T. Nguyen, Cathal Seoighe, Austen R.D. Ganley, Brian McStay

Genome Res. 2013 Dec; 23(12): 2003–2012. doi: 10.1101/gr.157941.113

PMCID:: PMC3847771

Abstract Article PDF–1.1M

Select item 359866017.

Careful Selection of Reference Genes Is Required for Reliable Performance of RT-qPCR in Human Normal and Cancer Cell Lines

Francis Jacob, Rea Guertler, Stephanie Naim, Sheri Nixdorf, André Fedier, Neville F. Hacker, Viola Heinzelmann-Schwarz

PLoS One. 2013; 8(3): e59180. Published online 2013 Mar 15. doi: 10.1371/journal.pone.0059180

PMCID:: PMC3598660

Abstract Article PDF–808K

Select item 354067518.

Defects of mtDNA Replication Impaired Mitochondrial Biogenesis During Trypanosoma cruzi Infection in Human Cardiomyocytes and Chagasic Patients: The Role of Nrf1/2 and Antioxidant Response

Xianxiu Wan, Shivali Gupta, Maria P. Zago, Mercy M. Davidson, Pierre Dousset, Alejandro Amoroso, Nisha Jain Garg

J Am Heart Assoc. 2012 Dec; 1(6): e003855. Published online 2012 Dec 19. doi: 10.1161/JAHA.112.003855

PMCID:: PMC3540675

Abstract Article PDF–2.3M

Select item 341679819.

A Drug Screening Method Based on the Autophagy Pathway and Studies of the Mechanism of Evodiamine against Influenza A Virus

Jian-Ping Dai, Wei-Zhong Li, Xiang-Feng Zhao, Ge-Fei Wang, Jia-Cai Yang, Lin Zhang, Xiao-Xuan Chen, Yan-Xuan Xu, Kang-Sheng Li

PLoS One. 2012; 7(8): e42706. Published online 2012 Aug 10. doi: 10.1371/journal.pone.0042706

PMCID:: PMC3416798

Abstract Article PDF–2.7M

Select item 333178820.

Osteopontin enhances HIV replication and is increased in the brain and cerebrospinal fluid of HIV-infected individuals

Amanda Brown, Tanzeem Islam, Robert Adams, Sujata Nerle, Masiray Kamara, Caitlin Eger, Karen Marder, Bruce Cohen, Giovanni Schifitto, Justin C. McArthur, Ned Sacktor, Carlos A. Pardo

J Neurovirol. Author manuscript; available in PMC 2012 Apr 20.

Published in final edited form as: J Neurovirol. 2011 Aug; 17(4): 382–392. Published online 2011 May 10. doi: 10.1007/s13365-011-0035-4