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Select item 70271951.

Systematic Nucleotide Exchange Analysis of ESTs From the Human Cancer Genome Project Report: Origins of 347 Unknown ESTs Indicate Putative Transcription of Non-Coding Genomic Regions

Ganesh Warthi, Pierre-Edouard Fournier, Hervé Seligmann

Front Genet. 2020; 11: 42. Published online 2020 Feb 11. doi: 10.3389/fgene.2020.00042

PMCID:: PMC7027195

Abstract Article PDF–1.2M

Select item 69805712.

Assessment of the clinical utility of four NGS panels in myeloid malignancies. Suggestions for NGS panel choice or design

Almudena Aguilera-Diaz, Iria Vazquez, Beñat Ariceta, Amagoia Mañú, Zuriñe Blasco-Iturri, Sara Palomino-Echeverría, María José Larrayoz, Ramón García-Sanz, María Isabel Prieto-Conde, María del Carmen Chillón, Ana Alfonso-Pierola, Felipe Prosper, Marta Fernandez-Mercado, María José Calasanz

PLoS One. 2020; 15(1): e0227986. Published online 2020 Jan 24. doi: 10.1371/journal.pone.0227986

PMCID:: PMC6980571

Abstract Article PDF–2.0M

Select item 68836273.

Validation of an epigenetic field of susceptibility to detect significant prostate cancer from non-tumor biopsies

Bing Yang, Tyler Etheridge, Johnathon McCormick, Adam Schultz, Tariq A. Khemees, Nathan Damaschke, Glen Leverson, Kaitlin Woo, Geoffrey A. Sonn, Eric A. Klein, Mike Fumo, Wei Huang, David F. Jarrard

Clin Epigenetics. 2019; 11: 168. Published online 2019 Nov 28. doi: 10.1186/s13148-019-0771-5

PMCID:: PMC6883627

Abstract Article PDF–807K

Select item 68165744.

Measurable residual disease monitoring for patients with acute myeloid leukemia following hematopoietic cell transplantation using error corrected hybrid capture next generation sequencing

Vidya Balagopal, Andrew Hantel, Sabah Kadri, George Steinhardt, Chao Jie Zhen, Wenjun Kang, Pankhuri Wanjari, Lauren L. Ritterhouse, Wendy Stock, Jeremy P. Segal

PLoS One. 2019; 14(10): e0224097. Published online 2019 Oct 28. doi: 10.1371/journal.pone.0224097

PMCID:: PMC6816574

Abstract Article PDF–655K

Select item 68048645.

Frequency of Germline Mutations in Cancer Susceptibility Genes in Malignant Mesothelioma

Vasiliki Panou, Meghana Gadiraju, Arthur Wolin, Caroline M. Weipert, Emily Skarda, Aliya N. Husain, Jyoti D. Patel, Buerkley Rose, Shannon R. Zhang, Madison Weatherly, Viswateja Nelakuditi, Amy Knight Johnson, Maria Helgeson, David Fischer, Arpita Desai, Nanna Sulai, Lauren Ritterhouse, Oluf D. Røe, Kiran K. Turaga, Dezheng Huo, Jeremy Segal, Sabah Kadri, Zejuan Li, Hedy L. Kindler, Jane E. Churpek

J Clin Oncol. 2018 Oct 1; 36(28): 2863–2871. Published online 2018 Aug 16. doi: 10.1200/JCO.2018.78.5204

PMCID:: PMC6804864

Abstract Article PDF–709K

Select item 67773556.

Knockdown of HE4 suppresses aggressive cell growth and malignant progression of ovarian cancer by inhibiting the JAK/STAT3 pathway

Aihong Wang, Canhui Jin, Xiaoyu Tian, Ying Wang, Hongyu Li

Biol Open. 2019 Sep 15; 8(9): bio043570. Published online 2019 Sep 15. doi: 10.1242/bio.043570

PMCID:: PMC6777355

Abstract Article PDF–6.6M

Select item 67742677.

Mechanisms of IFNalpha-1a-Induced Apoptosis in a Laryngeal Cancer Cell Line

Xiao-Lei Xin, Ran Zhang, Xiao-Mei Yuan, Li Liu

Med Sci Monit. 2019; 25: 7100–7114. Published online 2019 Sep 22. doi: 10.12659/MSM.917097

PMCID:: PMC6774267

Abstract Article PDF–2.4M

Select item 67596568.

Evaluation of the Possibility to Detect Circulating Tumor DNA From Pituitary Adenoma

Kaspars Megnis, Raitis Peculis, Vita Rovite, Pola Laksa, Helvijs Niedra, Inga Balcere, Olivija Caune, Austra Breiksa, Jurijs Nazarovs, Janis Stukens, Ilze Konrade, Valdis Pirags, Janis Klovins

Front Endocrinol (Lausanne) 2019; 10: 615. Published online 2019 Sep 18. doi: 10.3389/fendo.2019.00615

PMCID:: PMC6759656

Abstract Article PDF–354K

Select item 67366099.

Exploring by whole exome sequencing patients with initial diagnosis of Rubinstein–Taybi syndrome: the interconnections of epigenetic machinery disorders

Gloria Negri, Pamela Magini, Donatella Milani, Milena Crippa, Elisa Biamino, Maria Piccione, Stefano Sotgiu, Chiara Perrìa, Giuseppina Vitiello, Marina Frontali, Antonella Boni, Elisabetta Di Fede, Maria Chiara Gandini, Elisa Adele Colombo, Michael J. Bamshad, Deborah A. Nickerson, Joshua D. Smith, Italia Loddo, Palma Finelli, Marco Seri, Tommaso Pippucci, Lidia Larizza, Cristina Gervasini

Hum Genet. Author manuscript; available in PMC 2019 Sep 10.

Published in final edited form as: Hum Genet. 2019 Mar; 138(3): 257–269. Published online 2019 Feb 26. doi: 10.1007/s00439-019-01985-y

PMCID:: PMC6736609

Abstract Article PDF–491K

Select item 668394910.

Novel prion mutation (p.Tyr225Cys) in a Korean patient with atypical Creutzfeldt–Jakob disease

Eva Bagyinszky, YoungSoon Yang, Vo Van Giau, Young Chul Youn, Seong Soo A An, SangYun Kim

Clin Interv Aging. 2019; 14: 1387–1397. Published online 2019 Aug 2. doi: 10.2147/CIA.S210909

PMCID:: PMC6683949

Abstract Article PDF–4.2M

Select item 667828311.

Mutations in Prion Protein Gene: Pathogenic Mechanisms in C-Terminal vs. N-Terminal Domain, a Review

Livia Bernardi, Amalia C. Bruni

Int J Mol Sci. 2019 Jul; 20(14): 3606. Published online 2019 Jul 23. doi: 10.3390/ijms20143606

PMCID:: PMC6678283

Abstract Article PDF–589K

Select item 666070012.

A clinical survey of mosaic single nucleotide variants in disease-causing genes detected by exome sequencing

Ye Cao, Mari J. Tokita, Edward S. Chen, Rajarshi Ghosh, Tiansheng Chen, Yanming Feng, Elizabeth Gorman, Federica Gibellini, Patricia A. Ward, Alicia Braxton, Xia Wang, Linyan Meng, Rui Xiao, Weimin Bi, Fan Xia, Christine M. Eng, Yaping Yang, Tomasz Gambin, Chad Shaw, Pengfei Liu, Pawel Stankiewicz

Genome Med. 2019; 11: 48. Published online 2019 Jul 26. doi: 10.1186/s13073-019-0658-2

PMCID:: PMC6660700

Abstract Article PDF–980K

Select item 654655613.

Genome sequencing identifies multiple deleterious variants in autism patients with more severe phenotypes

Hui Guo, Michael H. Duyzend, Bradley P. Coe, Carl Baker, Kendra Hoekzema, Jennifer Gerdts, Tychele N. Turner, Michael C. Zody, Jennifer S. Beighley, Shwetha C. Murali, Bradley J. Nelson, University of Washington Center for Mendelian Genomics, Michael J. Bamshad, Deborah A. Nickerson, Raphael A. Bernier, Evan E. Eichler

Genet Med. Author manuscript; available in PMC 2020 Jan 1.

Published in final edited form as: Genet Med. 2019 Jul; 21(7): 1611–1620. Published online 2018 Dec 3. doi: 10.1038/s41436-018-0380-2

PMCID:: PMC6546556

Abstract Article PDF–1.0M

Select item 650301314.

Genetic analysis of pharmacogenomic VIP variants in the Blang population from Yunnan Province of China

Chan Zhang, Weiwei Guo, Yujing Cheng, Qi Li, Xin Yang, Run Dai, Linhao Zhu, Wanlu Chen

Mol Genet Genomic Med. 2019 May; 7(5): e574. Published online 2019 Apr 5. doi: 10.1002/mgg3.574

PMCID:: PMC6503013

Abstract Article PDF–1.2M

Select item 641836315.

Interaction of germline variants in a family with a history of early‐onset clear cell renal cell carcinoma

Emmanuelle Nicolas, Elena V. Demidova, Waleed Iqbal, Ilya G. Serebriiskii, Ramilia Vlasenkova, Pooja Ghatalia, Yan Zhou, Kim Rainey, Andrea F. Forman, Roland L. Dunbrack, Jr, Erica A. Golemis, Michael J. Hall, Mary B. Daly, Sanjeevani Arora

Mol Genet Genomic Med. 2019 Mar; 7(3): e556. Published online 2019 Jan 24. doi: 10.1002/mgg3.556

PMCID:: PMC6418363

Abstract Article PDF–1.8M

Select item 640259516.

Discriminating a common somatic ASXL1 mutation (c.1934dup; p.G646Wfs*12) from artifact in myeloid malignancies using NGS

Michael O. Alberti, Sridhar Nonavinkere Srivatsan, Jin Shao, Samantha N. McNulty, Gue Su Chang, Christopher A. Miller, Jennifer B. Dunlap, Fei Yang, Richard D. Press, Qingsong Gao, Li Ding, Jonathan W. Heusel, Eric J. Duncavage, Matthew J. Walter

Leukemia. Author manuscript; available in PMC 2019 Mar 6.

Published in final edited form as: Leukemia. 2018 Aug; 32(8): 1874–1878. Published online 2018 Jun 29. doi: 10.1038/s41375-018-0193-y

PMCID:: PMC6402595

Article PDF–1.1M

Select item 632764117.

Identification of differentially expressed non-coding RNAs and mRNAs involved in Qi stagnation and blood stasis syndrome

Guang Chen, Jialiang Gao, Haoqiang He, Chao Liu, Yongmei Liu, Jun Li, Jie Wang

Exp Ther Med. 2019 Feb; 17(2): 1206–1223. Published online 2018 Dec 7. doi: 10.3892/etm.2018.7068

PMCID:: PMC6327641

Abstract Article PDF–3.7M

Select item 626085218.

EIF4A3-induced circular RNA MMP9 (circMMP9) acts as a sponge of miR-124 and promotes glioblastoma multiforme cell tumorigenesis

Renjie Wang, Sai Zhang, Xuyi Chen, Nan Li, Jianwei Li, Ruichao Jia, Yuanqing Pan, Haiqian Liang

Mol Cancer. 2018; 17: 166. Published online 2018 Nov 23. doi: 10.1186/s12943-018-0911-0

Correction in:: Mol Cancer. 2020; 19: 153.

PMCID:: PMC6260852

Abstract Article PDF–7.1M

Select item 624559719.

SWIFOLD: Smith-Waterman implementation on FPGA with OpenCL for long DNA sequences

Enzo Rucci, Carlos Garcia, Guillermo Botella, Armando De Giusti, Marcelo Naiouf, Manuel Prieto-Matias

BMC Syst Biol. 2018; 12(Suppl 5): 96. Published online 2018 Nov 20. doi: 10.1186/s12918-018-0614-6

PMCID:: PMC6245597

Abstract Article PDF–746K

Select item 623477320.

Tropism of mesenchymal stem cell toward CD133⁺ stem cell of glioblastoma in vitro and promote tumor proliferation in vivo

Lorena Favaro Pavon, Tatiana Tais Sibov, Andrea Vieira de Souza, Edgar Ferreira da Cruz, Suzana M. F. Malheiros, Francisco Romero Cabral, Jean Gabriel de Souza, Pamela Boufleur, Daniela Mara de Oliveira, Silvia Regina Caminada de Toledo, Luciana C. Marti, Jackeline Moraes Malheiros, Fernando F. Paiva, Alberto Tannús, Sérgio Mascarenhas de Oliveira, Ana Marisa Chudzinski-Tavassi, Manoel A. de Paiva Neto, Sérgio Cavalheiro

Stem Cell Res Ther. 2018; 9: 310. Published online 2018 Nov 9. doi: 10.1186/s13287-018-1049-0

PMCID:: PMC6234773

Abstract Article PDF–3.7M

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