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Items: 17

1.
Linking De Novo Assembly Results with Long DNA Reads Using the dnaasm-link Application
Wiktor Kuśmirek, Wiktor Franus, Robert Nowak
Biomed Res Int. 2019; 2019: 7847064. Published online 2019 Apr 11. doi: 10.1155/2019/7847064
PMCID:
PMC6487145
AbstractArticlePDF–896K
2.
GRIBCG: a software for selection of sgRNAs in the design of balancer chromosomes
Brian B. Merritt, Lily S. Cheung
BMC Bioinformatics. 2019; 20: 122. Published online 2019 Mar 12. doi: 10.1186/s12859-019-2712-x
PMCID:
PMC6416924
AbstractArticlePDF–1.4M
3.
The Nematode Caenorhabditis elegans as a Model Organism to Study Metabolic Effects of ω-3 Polyunsaturated Fatty Acids in Obesity
Amal Bouyanfif, Shasika Jayarathne, Iurii Koboziev, Naima Moustaid-Moussa
Adv Nutr. 2019 Jan; 10(1): 165–178. Published online 2019 Jan 24. doi: 10.1093/advances/nmy059
PMCID:
PMC6370270
AbstractArticlePDF–4.2M
4.
EuGI: a novel resource for studying genomic islands to facilitate horizontal gene transfer detection in eukaryotes
Frederick Johannes Clasen, Rian Ewald Pierneef, Bernard Slippers, Oleg Reva
BMC Genomics. 2018; 19: 323. Published online 2018 May 3. doi: 10.1186/s12864-018-4724-8
PMCID:
PMC5934851
AbstractArticlePDF–1.1M
5.
Database of Periodic DNA Regions in Major Genomes
Felix E. Frenkel, Maria A. Korotkova, Eugene V. Korotkov
Biomed Res Int. 2017; 2017: 7949287. Published online 2017 Jan 15. doi: 10.1155/2017/7949287
PMCID:
PMC5274682
AbstractArticlePDF–734K
6.
How genome complexity can explain the difficulty of aligning reads to genomes
Vinhthuy Phan, Shanshan Gao, Quang Tran, Nam S Vo
BMC Bioinformatics. 2015; 16(Suppl 17): S3. Published online 2015 Dec 7. doi: 10.1186/1471-2105-16-S17-S3
PMCID:
PMC4674900
AbstractArticlePDF–2.1M
7.
A New Player in the Spermiogenesis Pathway of Caenorhabditis elegans
Craig W. LaMunyon, Ubaydah Nasri, Nicholas G. Sullivan, Misa A. Shaw, Gaurav Prajapati, Matthew Christensen, Daniel Elmatari, Jessica N. Clark
Genetics. 2015 Nov; 201(3): 1103–1116. Published online 2015 Sep 2. doi: 10.1534/genetics.115.181172
PMCID:
PMC4649638
AbstractArticlePDF–2.5M
8.
Comparative Genomic Analysis of slc39a12/ZIP12: Insight into a Zinc Transporter Required for Vertebrate Nervous System Development
Winyoo Chowanadisai
PLoS One. 2014; 9(11): e111535. Published online 2014 Nov 6. doi: 10.1371/journal.pone.0111535
PMCID:
PMC4222902
AbstractArticlePDF–1.8M
9.
RandAL: a randomized approach to aligning DNA sequences to reference genomes
Nam S Vo, Quang Tran, Nobal Niraula, Vinhthuy Phan
BMC Genomics. 2014; 15(Suppl 5): S2. Published online 2014 Jul 14. doi: 10.1186/1471-2164-15-S5-S2
PMCID:
PMC4120144
AbstractArticlePDF–1.2M
10.
Proteogenomic database construction driven from large scale RNA-seq data
Sunghee Woo, Seong Won Cha, Gennifer Merrihew, Yupeng He, Natalie Castellana, Clark Guest, Michael MacCoss, Vineet Bafna
J Proteome Res. Author manuscript; available in PMC 2015 Jan 3.
Published in final edited form as: J Proteome Res. 2014 Jan 3; 13(1): 21–28. Published online 2013 Jul 17. doi: 10.1021/pr400294c
PMCID:
PMC4034692
AbstractArticlePDF–1.9M
11.
A base composition analysis of natural patterns for the preprocessing of metagenome sequences
Oliver Bonham-Carter, Hesham Ali, Dhundy Bastola
BMC Bioinformatics. 2013; 14(Suppl 11): S5. Published online 2013 Nov 4. doi: 10.1186/1471-2105-14-S11-S5
PMCID:
PMC3816298
AbstractArticlePDF–2.2M
12.
A Small Conductance Calcium-Activated K+ Channel in C. elegans, KCNL-2, Plays a Role in the Regulation of the Rate of Egg-Laying
Cavita K. Chotoo, Gary A. Silverman, Daniel C. Devor, Cliff J. Luke
PLoS One. 2013; 8(9): e75869. Published online 2013 Sep 10. doi: 10.1371/journal.pone.0075869
PMCID:
PMC3769271
AbstractArticlePDF–1.3M
13.
Premature Sperm Activation and Defective Spermatogenesis Caused by Loss of spe-46 Function in Caenorhabditis elegans
Wei-Siang Liau, Ubaydah Nasri, Daniel Elmatari, Jason Rothman, Craig W. LaMunyon
PLoS One. 2013; 8(3): e57266. Published online 2013 Mar 6. doi: 10.1371/journal.pone.0057266
PMCID:
PMC3590197
AbstractArticlePDF–3.8M
14.
Rapid Mapping and Identification of Mutations in Caenorhabditis elegans by Restriction Site-Associated DNA Mapping and Genomic Interval Pull-Down Sequencing
Sean M. O’Rourke, John Yochem, Amy A. Connolly, Meredith H. Price, Luke Carter, Joshua B. Lowry, Douglas W. Turnbull, Nick Kamps-Hughes, Nicholas Stiffler, Michael R. Miller, Eric A. Johnson, Bruce Bowerman
Genetics. 2011 Nov; 189(3): 767–778. doi: 10.1534/genetics.111.134031
PMCID:
PMC3213368
AbstractArticlePDF–1.2M
15.
A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies
Wenyu Zhang, Jiajia Chen, Yang Yang, Yifei Tang, Jing Shang, Bairong Shen
PLoS One. 2011; 6(3): e17915. Published online 2011 Mar 14. doi: 10.1371/journal.pone.0017915
PMCID:
PMC3056720
AbstractArticlePDF–2.2M
16.
A Mutation of cdc-25.1 Causes Defects in Germ Cells But Not in Somatic Tissues in C. elegans
Jiyoung Kim, Ah-Reum Lee, Ichiro Kawasaki, Susan Strome, Yhong-Hee Shim
Mol Cells. Author manuscript; available in PMC 2010 Jul 22.
Published in final edited form as: Mol Cells. 2009 Jul 31; 28(1): 43–48. Published online 2009 Jun 12. doi: 10.1007/s10059-009-0098-8
PMCID:
PMC2908335
AbstractArticlePDF–354K
17.
Identification of a gonadotropin-releasing hormone receptor orthologue in Caenorhabditis elegans
Sivan Vadakkadath Meethal, Miguel J Gallego, Ryan J Haasl, Stephen J Petras, III, Jean-Yves Sgro, Craig S Atwood
BMC Evol Biol. 2006; 6: 103. Published online 2006 Nov 29. doi: 10.1186/1471-2148-6-103
PMCID:
PMC1762030
AbstractArticlePDF–3.3M

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