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Select item 68073811.

An analysis of the IS6/IS26 family of insertion sequences: is it a single family?

Christopher J. Harmer, Ruth M. Hall

Microb Genom. 2019 Sep; 5(9): e000291. Published online 2019 Sep 5. doi: 10.1099/mgen.0.000291

PMCID:: PMC6807381

Abstract Article PDF–14M

Select item 68065252.

RNA 3D structure prediction guided by independent folding of homologous sequences

Marcin Magnus, Kalli Kappel, Rhiju Das, Janusz M. Bujnicki

BMC Bioinformatics. 2019; 20: 512. Published online 2019 Oct 22. doi: 10.1186/s12859-019-3120-y

PMCID:: PMC6806525

Abstract Article PDF–2.3M

Select item 66778213.

The population structure of Clostridium tetani deduced from its pan-genome

Diana Chapeton-Montes, Lucile Plourde, Christiane Bouchier, Laurence Ma, Laure Diancourt, Alexis Criscuolo, Michel Robert Popoff, Holger Brüggemann

Sci Rep. 2019; 9: 11220. Published online 2019 Aug 2. doi: 10.1038/s41598-019-47551-4

Correction in:: Sci Rep. 2019; 9: 17409.

PMCID:: PMC6677821

Abstract Article PDF–3.3M

Select item 62391774.

Gene regulation by a glycine riboswitch singlet uses a finely tuned energetic landscape for helical switching

Chad D. Torgerson, David A. Hiller, Shira Stav, Scott A. Strobel

RNA. 2018 Dec; 24(12): 1813–1827. doi: 10.1261/rna.067884.118

Correction in:: RNA. 2024 Sep; 30(9): 1259-1.

PMCID:: PMC6239177

Abstract Article PDF–6.6M

Select item 55536475.

Comparative pathogenomics of Clostridium tetani

Jonathan E. Cohen, Rong Wang, Rong-Fong Shen, Wells W. Wu, James E. Keller

PLoS One. 2017; 12(8): e0182909. Published online 2017 Aug 11. doi: 10.1371/journal.pone.0182909

PMCID:: PMC5553647

Abstract Article PDF–3.0M

Select item 53765756.

Genetic Characterization of the Exceptionally High Heat Resistance of the Non-toxic Surrogate Clostridium sporogenes PA 3679

Robert R. Butler, III, Kristin M. Schill, Yun Wang, Jean-François Pombert

Front Microbiol. 2017; 8: 545. Published online 2017 Apr 3. doi: 10.3389/fmicb.2017.00545

PMCID:: PMC5376575

Abstract Article PDF–1.1M

Select item 45331527.

Viral dark matter and virus–host interactions resolved from publicly available microbial genomes

Simon Roux, Steven J Hallam, Tanja Woyke, Matthew B Sullivan

eLife. 2015; 4: e08490. Published online 2015 Jul 22. doi: 10.7554/eLife.08490

PMCID:: PMC4533152

Abstract Article PDF–2.8M

Select item 41846198.

Genome of a chronic osteitis-causing Clostridium tetani

P-E Fournier, P-Y Levy, M Million, O Croce, C Blanc-Tailleur, P Brouqui, D Raoult

New Microbes New Infect. 2014 Jan; 2(1): 25–26. Published online 2014 Jan 28. doi: 10.1002/2052-2975.27

PMCID:: PMC4184619

Abstract Article PDF–419K

Select item 41784119.

Clostridium tetani Osteitis without Tetanus

Pierre-Yves Levy, Pierre-Edouard Fournier, Laurène Lotte, Matthieu Million, Philippe Brouqui, Didier Raoult

Emerg Infect Dis. 2014 Sep; 20(9): 1571–1573. doi: 10.3201/eid2009.131579

PMCID:: PMC4178411

Article PDF–278K

Select item 381629810.

A base composition analysis of natural patterns for the preprocessing of metagenome sequences

Oliver Bonham-Carter, Hesham Ali, Dhundy Bastola

BMC Bioinformatics. 2013; 14(Suppl 11): S5. Published online 2013 Nov 4. doi: 10.1186/1471-2105-14-S11-S5

PMCID:: PMC3816298

Abstract Article PDF–2.2M

Select item 367201711.

Genomic and physiological variability within Group II (non-proteolytic) Clostridium botulinum

Sandra C Stringer, Andrew T Carter, Martin D Webb, Ewelina Wachnicka, Lisa C Crossman, Mohammed Sebaihia, Michael W Peck

BMC Genomics. 2013; 14: 333. Published online 2013 May 16. doi: 10.1186/1471-2164-14-333

PMCID:: PMC3672017

Abstract Article PDF–3.2M

Select item 363917912.

Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms

Felix G Eikmeyer, Antje Rademacher, Angelika Hanreich, Magdalena Hennig, Sebastian Jaenicke, Irena Maus, Daniel Wibberg, Martha Zakrzewski, Alfred Pühler, Michael Klocke, Andreas Schlüter

Biotechnol Biofuels. 2013; 6: 49. Published online 2013 Apr 4. doi: 10.1186/1754-6834-6-49

PMCID:: PMC3639179

Abstract Article PDF–318K

Select item 358421213.

First insights into the syntrophic acetate-oxidizing bacteria – a genetic study

Bettina Müller, Li Sun, Anna Schnürer

Microbiologyopen. 2013 Feb; 2(1): 35–53. Published online 2012 Dec 13. doi: 10.1002/mbo3.50

PMCID:: PMC3584212

Abstract Article PDF–5.3M

Select item 353456714.

Thousands of missed genes found in bacterial genomes and their analysis with COMBREX

Derrick E Wood, Henry Lin, Ami Levy-Moonshine, Rajiswari Swaminathan, Yi-Chien Chang, Brian P Anton, Lais Osmani, Martin Steffen, Simon Kasif, Steven L Salzberg

Biol Direct. 2012; 7: 37. Published online 2012 Oct 30. doi: 10.1186/1745-6150-7-37

PMCID:: PMC3534567

Abstract Article PDF–878K

Select item 353376115.

Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation-specific genes

Michael Y Galperin, Sergei L Mekhedov, Pere Puigbo, Sergey Smirnov, Yuri I Wolf, Daniel J Rigden

Environ Microbiol. 2012 Nov; 14(11): 2870–2890. doi: 10.1111/j.1462-2920.2012.02841.x

PMCID:: PMC3533761

Abstract Article PDF–439K

Select item 308578916.

A universal strategy for high-yield production of soluble and functional clostridial collagenases in E. coli

Paulina Ducka, Ulrich Eckhard, Esther Schönauer, Stefan Kofler, Gerhard Gottschalk, Hans Brandstetter, Dorota Nüss

Appl Microbiol Biotechnol. 2009; 83(6): 1055–1065. Published online 2009 Mar 31. doi: 10.1007/s00253-009-1953-4

PMCID:: PMC3085789

Abstract Article PDF–636K

Select item 294030617.

Inferring Bacterial Genome Flux While Considering Truncated Genes

Weilong Hao, G. Brian Golding

Genetics. 2010 Sep; 186(1): 411–426. doi: 10.1534/genetics.110.118448

PMCID:: PMC2940306

Abstract Article PDF–2.2M

Select item 291683418.

sRNAscanner: A Computational Tool for Intergenic Small RNA Detection in Bacterial Genomes

Jayavel Sridhar, Suryanarayanan Ramkumar Narmada, Radhakrishnan Sabarinathan, Hong-Yu Ou, Zixin Deng, Kanagaraj Sekar, Ziauddin Ahamed Rafi, Kumar Rajakumar

PLoS One. 2010; 5(8): e11970. Published online 2010 Aug 5. doi: 10.1371/journal.pone.0011970

Correction in:: PLoS One. 2010; 5(9): 10.1371/annotation/71408e55-e1d3-4950-9c3b-d3a3ad66a1ff.

PMCID:: PMC2916834

Abstract Article PDF–815K

Select item 284374619.

Abundant Oligonucleotides Common to Most Bacteria

Colin F. Davenport, Burkhard Tümmler

PLoS One. 2010; 5(3): e9841. Published online 2010 Mar 23. doi: 10.1371/journal.pone.0009841

PMCID:: PMC2843746

Abstract Article PDF–438K

Select item 272561020.

Proteomic and Genomic Characterization of Highly Infectious Clostridium difficile 630 Spores

Trevor D. Lawley, Nicholas J. Croucher, Lu Yu, Simon Clare, Mohammed Sebaihia, David Goulding, Derek J. Pickard, Julian Parkhill, Jyoti Choudhary, Gordon Dougan

J Bacteriol. 2009 Sep; 191(17): 5377–5386. Published online 2009 Jun 19. doi: 10.1128/JB.00597-09