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Items: 1 to 20 of 36

1.
Linking De Novo Assembly Results with Long DNA Reads Using the dnaasm-link Application
Wiktor Kuśmirek, Wiktor Franus, Robert Nowak
Biomed Res Int. 2019; 2019: 7847064. Published online 2019 Apr 11. doi: 10.1155/2019/7847064
PMCID:
PMC6487145
AbstractArticlePDF–896K
2.
GRIBCG: a software for selection of sgRNAs in the design of balancer chromosomes
Brian B. Merritt, Lily S. Cheung
BMC Bioinformatics. 2019; 20: 122. Published online 2019 Mar 12. doi: 10.1186/s12859-019-2712-x
PMCID:
PMC6416924
AbstractArticlePDF–1.4M
3.
Comparative mitochondrial genomics reveals a possible role of a recent duplication of NADH dehydrogenase subunit 5 in gene regulation
Runsheng Li, Xiaoliang Ren, Yu Bi, Qiutao Ding, Vincy Wing Sze Ho, Zhongying Zhao
DNA Res. 2018 Dec; 25(6): 577–586. Published online 2018 Aug 6. doi: 10.1093/dnares/dsy026
PMCID:
PMC6289777
AbstractArticlePDF–1.5M
4.
Clonal expansion of mitochondrial DNA deletions is a private mechanism of aging in long‐lived animals
Lakshmi Narayanan Lakshmanan, Zhuangli Yee, Li Fang Ng, Rudiyanto Gunawan, Barry Halliwell, Jan Gruber
Aging Cell. 2018 Oct; 17(5): e12814. Published online 2018 Jul 24. doi: 10.1111/acel.12814
PMCID:
PMC6156498
AbstractArticlePDF–1.1M
5.
A complete logical approach to resolve the evolution and dynamics of mitochondrial genome in bilaterians
Laurent Oxusoff, Pascal Préa, Yvan Perez
PLoS One. 2018; 13(3): e0194334. Published online 2018 Mar 16. doi: 10.1371/journal.pone.0194334
PMCID:
PMC5856267
AbstractArticlePDF–5.9M
6.
NumtS colonization in mammalian genomes
F. M. Calabrese, D. L. Balacco, R. Preste, M. A. Diroma, R. Forino, M. Ventura, M. Attimonelli
Sci Rep. 2017; 7: 16357. Published online 2017 Nov 27. doi: 10.1038/s41598-017-16750-2
PMCID:
PMC5703718
AbstractArticlePDF–3.2M
7.
Mitogenomics reveals high synteny and long evolutionary histories of sympatric cryptic nematode species
Tara Grosemans, Krystalynne Morris, William Kelley Thomas, Annelien Rigaux, Tom Moens, Sofie Derycke
Ecol Evol. 2016 Mar; 6(6): 1854–1870. Published online 2016 Feb 20. doi: 10.1002/ece3.1975
PMCID:
PMC4760989
AbstractArticlePDF–584K
8.
Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer
Young Seok Ju, Ludmil B Alexandrov, Moritz Gerstung, Inigo Martincorena, Serena Nik-Zainal, Manasa Ramakrishna, Helen R Davies, Elli Papaemmanuil, Gunes Gundem, Adam Shlien, Niccolo Bolli, Sam Behjati, Patrick S Tarpey, Jyoti Nangalia, Charles E Massie, Adam P Butler, Jon W Teague, George S Vassiliou, Anthony R Green, Ming-Qing Du, Ashwin Unnikrishnan, John E Pimanda, Bin Tean Teh, Nikhil Munshi, Mel Greaves, Paresh Vyas, Adel K El-Naggar, Tom Santarius, V Peter Collins, Richard Grundy, Jack A Taylor, D Neil Hayes, David Malkin, ICGC Breast Cancer Group, ICGC Chronic Myeloid Disorders Group, ICGC Prostate Cancer Group, Christopher S Foster, Anne Y Warren, Hayley C Whitaker, Daniel Brewer, Rosalind Eeles, Colin Cooper, David Neal, Tapio Visakorpi, William B Isaacs, G Steven Bova, Adrienne M Flanagan, P Andrew Futreal, Andy G Lynch, Patrick F Chinnery, Ultan McDermott, Michael R Stratton, Peter J Campbell
eLife. 2014; 3: e02935. Published online 2014 Oct 1. doi: 10.7554/eLife.02935
PMCID:
PMC4371858
AbstractArticlePDF–1.7M
9.
Two cases of human thelaziasis as confirmed by mitochondrial cox1 sequencing in China
Xiao-Li Wang, Jiu-Ying Guo, Xue-Lian Wang, Xiao-Li Ma, Yi Wang, Chun-Li An
Pathog Glob Health. 2014 Sep; 108(6): 298–301. doi: 10.1179/2047773214Y.0000000153
PMCID:
PMC4216753
AbstractArticlePDF–425K
10.
Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
Rei Kajitani, Kouta Toshimoto, Hideki Noguchi, Atsushi Toyoda, Yoshitoshi Ogura, Miki Okuno, Mitsuru Yabana, Masayuki Harada, Eiji Nagayasu, Haruhiko Maruyama, Yuji Kohara, Asao Fujiyama, Tetsuya Hayashi, Takehiko Itoh
Genome Res. 2014 Aug; 24(8): 1384–1395. doi: 10.1101/gr.170720.113
PMCID:
PMC4120091
AbstractArticlePDF–1.2M
11.
Mitochondrial DNA Variant in COX1 Subunit Significantly Alters Energy Metabolism of Geographically Divergent Wild Isolates in Caenorhabditis elegans
Stephen D. Dingley, Erzsebet Polyak, Julian Ostrovsky, Satish Srinivasan, Icksoo Lee, Amy B. Rosenfeld, Mai Tsukikawa, Rui Xiao, Mary A. Selak, Joshua J. Coon, Alexander S. Hebert, Paul A. Grimsrud, Young Joon Kwon, David J. Pagliarini, Xiaowu Gai, Theodore G. Schurr, Maik Hüttemann, Eiko Nakamaru-Ogiso, Marni J. Falk
J Mol Biol. Author manuscript; available in PMC 2015 May 29.
Published in final edited form as: J Mol Biol. 2014 May 29; 426(11): 2199–2216. Published online 2014 Feb 14. doi: 10.1016/j.jmb.2014.02.009
PMCID:
PMC4067970
AbstractArticlePDF–2.3M
12.
MitoBreak: the mitochondrial DNA breakpoints database
Joana Damas, João Carneiro, António Amorim, Filipe Pereira
Nucleic Acids Res. 2014 Jan 1; 42(Database issue): D1261–D1268. Published online 2013 Oct 28. doi: 10.1093/nar/gkt982
PMCID:
PMC3965124
AbstractArticlePDF–7.2M
13.
Identification of Optimum Sequencing Depth Especially for De Novo Genome Assembly of Small Genomes Using Next Generation Sequencing Data
Aarti Desai, Veer Singh Marwah, Akshay Yadav, Vineet Jha, Kishor Dhaygude, Ujwala Bangar, Vivek Kulkarni, Abhay Jere
PLoS One. 2013; 8(4): e60204. Published online 2013 Apr 12. doi: 10.1371/journal.pone.0060204
PMCID:
PMC3625192
AbstractArticlePDF–1.2M
14.
Profiling Nematode Communities in Unmanaged Flowerbed and Agricultural Field Soils in Japan by DNA Barcode Sequencing
Hisashi Morise, Erika Miyazaki, Shoko Yoshimitsu, Toshihiko Eki
PLoS One. 2012; 7(12): e51785. Published online 2012 Dec 20. doi: 10.1371/journal.pone.0051785
PMCID:
PMC3527504
AbstractArticlePDF–508K
15.
The Fragmented Mitochondrial Ribosomal RNAs of Plasmodium falciparum
Jean E. Feagin, Maria Isabel Harrell, Jung C. Lee, Kevin J. Coe, Bryan H. Sands, Jamie J. Cannone, Germaine Tami, Murray N. Schnare, Robin R. Gutell
PLoS One. 2012; 7(6): e38320. Published online 2012 Jun 22. doi: 10.1371/journal.pone.0038320
PMCID:
PMC3382252
AbstractArticlePDF–1.4M
16.
DNA Replication and Strand Asymmetry in Prokaryotic and Mitochondrial Genomes
Xuhua Xia
Curr Genomics. 2012 Mar; 13(1): 16–27. Published online 2012 Mar. doi: 10.2174/138920212799034776
PMCID:
PMC3269012
AbstractArticlePDF–275K
17.
Predictive role of mitochondrial genome in the stress resistance of insects and nematodes
Akshay Pandey, Shubhankar Suman, Sudhir Chandna
Bioinformation. 2010; 5(1): 21–27. Published online 2010 Jun 24. doi: 10.6026/97320630005021
PMCID:
PMC3040000
AbstractArticlePDF–1.4M
18.
The phylogenetic position of Acoela as revealed by the complete mitochondrial genome of Symsagittifera roscoffensis
Adina Mwinyi, Xavier Bailly, Sarah J Bourlat, Ulf Jondelius, D Timothy J Littlewood, Lars Podsiadlowski
BMC Evol Biol. 2010; 10: 309. Published online 2010 Oct 13. doi: 10.1186/1471-2148-10-309
PMCID:
PMC2973942
AbstractArticlePDF–1.5M
19.
Exploring the Use of Cytochrome Oxidase c Subunit 1 (COI) for DNA Barcoding of Free-Living Marine Nematodes
Sofie Derycke, Jan Vanaverbeke, Annelien Rigaux, Thierry Backeljau, Tom Moens
PLoS One. 2010; 5(10): e13716. Published online 2010 Oct 28. doi: 10.1371/journal.pone.0013716
PMCID:
PMC2965665
AbstractArticlePDF–812K
20.
Large Deviations for Random Trees and the Branching of RNA Secondary Structures
Yuri Bakhtin, Christine E. Heitsch
Bull Math Biol. Author manuscript; available in PMC 2010 Mar 8.
Published in final edited form as: Bull Math Biol. 2009 Jan; 71(1): 84–106. Published online 2008 Dec 13. doi: 10.1007/s11538-008-9353-y
PMCID:
PMC2834537
AbstractArticlePDF–1.0M

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