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Select item 64475221.

Uncovering carbohydrate metabolism through a genotype-phenotype association study of 56 lactic acid bacteria genomes

Gemma Buron-Moles, Anna Chailyan, Igor Dolejs, Jochen Forster, Marta Hanna Mikš

Appl Microbiol Biotechnol. 2019; 103(7): 3135–3152. Published online 2019 Mar 4. doi: 10.1007/s00253-019-09701-6

PMCID:: PMC6447522

Abstract Article PDF–958K

Select item 63963482.

Rapid bacterial identification by direct PCR amplification of 16S rRNA genes using the MinION™ nanopore sequencer

Shinichi Kai, Yoshiyuki Matsuo, So Nakagawa, Kirill Kryukov, Shino Matsukawa, Hiromasa Tanaka, Teppei Iwai, Tadashi Imanishi, Kiichi Hirota

FEBS Open Bio. 2019 Mar; 9(3): 548–557. Published online 2019 Jan 29. doi: 10.1002/2211-5463.12590

PMCID:: PMC6396348

Abstract Article PDF–480K

Select item 63842543.

The Evolutionary History and Functional Divergence of Trehalase (treh) Genes in Insects

Andrea Nardelli, Matteo Vecchi, Mauro Mandrioli, Gian Carlo Manicardi

Front Physiol. 2019; 10: 62. Published online 2019 Feb 15. doi: 10.3389/fphys.2019.00062

PMCID:: PMC6384254

Abstract Article PDF–2.4M

Select item 62931064.

Genus-Wide Assessment of Antibiotic Resistance in Lactobacillus spp.

Ilenia Campedelli, Harsh Mathur, Elisa Salvetti, Siobhán Clarke, Mary C. Rea, Sandra Torriani, R. Paul Ross, Colin Hill, Paul W. O’Toole

Appl Environ Microbiol. 2019 Jan 1; 85(1): e01738-18. Prepublished online 2018 Oct 26. Published online 2018 Dec 13. doi: 10.1128/AEM.01738-18

PMCID:: PMC6293106

Abstract Article PDF–1.9M

Select item 60969395.

Using glycolysis enzyme sequences to inform Lactobacillus phylogeny

Katelyn Brandt, Rodolphe Barrangou

Microb Genom. 2018 Jun; 4(6): e000187. Published online 2018 Jun 22. doi: 10.1099/mgen.0.000187

PMCID:: PMC6096939

Abstract Article PDF–3.5M

Select item 59977896.

A Small Molecule-Screening Pipeline to Evaluate the Therapeutic Potential of 2-Aminoimidazole Molecules Against Clostridium difficile

Rajani Thanissery, Daina Zeng, Raul G. Doyle, Casey M. Theriot

Front Microbiol. 2018; 9: 1206. Published online 2018 Jun 6. doi: 10.3389/fmicb.2018.01206

PMCID:: PMC5997789

Abstract Article PDF–1.6M

Select item 58425027.

Bacterial Diversity in Traditional Doogh in Comparison to Industrial Doogh

Hamid Reza Sayevand, Farzaneh Bakhtiary, Angelika Pointner, Marlene Remely, Berit Hippe, Hedayat Hosseini, Alexander Haslberger

Curr Microbiol. 2018; 75(4): 386–393. Published online 2017 Nov 21. doi: 10.1007/s00284-017-1392-x

PMCID:: PMC5842502

Abstract Article PDF–1.6M

Select item 55385678.

Measurement of bacterial replication rates in microbial communities

Christopher T. Brown, Matthew R. Olm, Brian C. Thomas, Jillian F. Banfield

Nat Biotechnol. Author manuscript; available in PMC 2017 Aug 1.

Published in final edited form as: Nat Biotechnol. 2016 Dec; 34(12): 1256–1263. Published online 2016 Nov 7. doi: 10.1038/nbt.3704

PMCID:: PMC5538567

Article PDF–1.3M

Select item 54497209.

Characterization of Bile Salt Hydrolase from Lactobacillus gasseri FR4 and Demonstration of Its Substrate Specificity and Inhibitory Mechanism Using Molecular Docking Analysis

Rizwana Parveen Rani, Marimuthu Anandharaj, Abraham David Ravindran

Front Microbiol. 2017; 8: 1004. Published online 2017 May 31. doi: 10.3389/fmicb.2017.01004

PMCID:: PMC5449720

Abstract Article PDF–4.9M

Select item 528665510.

Potential probiotic-associated traits revealed from completed high quality genome sequence of Lactobacillus fermentum 3872

Burhan Lehri, Alan M. Seddon, Andrey V. Karlyshev

Stand Genomic Sci. 2017; 12: 19. Published online 2017 Feb 1. doi: 10.1186/s40793-017-0228-4

PMCID:: PMC5286655

Abstract Article PDF–1.5M

Select item 498453711.

Expression of arsenic resistance genes in the obligate anaerobe Bacteroides vulgatus ATCC 8482, a gut microbiome bacterium

Jiaojiao Li, Goutam Mandal, Barry P. Rosen

Anaerobe. Author manuscript; available in PMC 2017 Jun 1.

Published in final edited form as: Anaerobe. 2016 Jun; 39: 117–123. Published online 2016 Mar 31. doi: 10.1016/j.anaerobe.2016.03.012

PMCID:: PMC4984537

Abstract Article PDF–1.7M

Select item 492077412.

Comparative Genomics Reveals Biomarkers to Identify Lactobacillus Species

Shikha Koul, Vipin Chandra Kalia

Indian J Microbiol. 2016 Sep; 56(3): 265–276. Published online 2016 Jun 16. doi: 10.1007/s12088-016-0605-5

PMCID:: PMC4920774

Abstract Article PDF–457K

Select item 473598013.

FN-Identify: Novel Restriction Enzymes-Based Method for Bacterial Identification in Absence of Genome Sequencing

Mohamed Awad, Osama Ouda, Ali El-Refy, Fawzy A. El-Feky, Kareem A. Mosa, Mohamed Helmy

Adv Bioinformatics. 2015; 2015: 303605. Published online 2015 Dec 31. doi: 10.1155/2015/303605

PMCID:: PMC4735980

Abstract Article PDF–852K

Select item 473076614.

Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer

Alfonso Benítez-Páez, Kevin J. Portune, Yolanda Sanz

Gigascience. 2016; 5: 4. Published online 2016 Jan 28. doi: 10.1186/s13742-016-0111-z

PMCID:: PMC4730766

Abstract Article PDF–939K

Select item 459320615.

An accurate and efficient experimental approach for characterization of the complex oral microbiota

Wei Zheng, Maria Tsompana, Angela Ruscitto, Ashu Sharma, Robert Genco, Yijun Sun, Michael J. Buck

Microbiome. 2015; 3: 48. Published online 2015 Oct 5. doi: 10.1186/s40168-015-0110-9

PMCID:: PMC4593206

Abstract Article PDF–1.1M

Select item 453563016.

Metagenomic Sequencing Indicates That the Oropharyngeal Phageome of Individuals With Schizophrenia Differs From That of Controls

Robert H. Yolken, Emily G. Severance, Sarven Sabunciyan, Kristin L. Gressitt, Ou Chen, Cassie Stallings, Andrea Origoni, Emily Katsafanas, Lucy A. B. Schweinfurth, Christina L. G. Savage, Maria Banis, Sunil Khushalani, Faith B. Dickerson

Schizophr Bull. 2015 Sep; 41(5): 1153–1161. Published online 2015 Feb 9. doi: 10.1093/schbul/sbu197

PMCID:: PMC4535630

Abstract Article PDF–2.1M

Select item 450408917.

CpG DNA analysis of bacterial STDs

Martin Singer, Dewi J de Waaij, Servaas A Morré, Sander Ouburg

BMC Infect Dis. 2015; 15: 273. Published online 2015 Jul 16. doi: 10.1186/s12879-015-1016-7

PMCID:: PMC4504089

Abstract Article PDF–549K

Select item 437702718.

Complete genome sequence and analysis of Lactobacillus hokkaidonensis LOOC260^T, a psychrotrophic lactic acid bacterium isolated from silage

Yasuhiro Tanizawa, Masanori Tohno, Eli Kaminuma, Yasukazu Nakamura, Masanori Arita

BMC Genomics. 2015; 16(1): 240. Published online 2015 Mar 25. doi: 10.1186/s12864-015-1435-2

PMCID:: PMC4377027

Abstract Article PDF–3.2M

Select item 419622819.

Metagenome-Wide Association of Microbial Determinants of Host Phenotype in Drosophila melanogaster

John M. Chaston, Peter D. Newell, Angela E. Douglas

mBio. 2014 Sep-Oct; 5(5): e01631-14. Published online 2014 Sep 30. doi: 10.1128/mBio.01631-14

PMCID:: PMC4196228

Abstract Article PDF–1.5M

Select item 395760120.

The Gastrointestinal Tract of the White-Throated Woodrat (Neotoma albigula) Harbors Distinct Consortia of Oxalate-Degrading Bacteria

Aaron W. Miller, Kevin D. Kohl, M. Denise Dearing

Appl Environ Microbiol. 2014 Mar; 80(5): 1595–1601. doi: 10.1128/AEM.03742-13

PMCID:: PMC3957601

Abstract Article PDF–590K

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