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Select item 68416551.

CNN-MGP: Convolutional Neural Networks for Metagenomics Gene Prediction

Amani Al-Ajlan, Achraf El Allali

Interdiscip Sci. 2019; 11(4): 628–635. Published online 2018 Dec 27. doi: 10.1007/s12539-018-0313-4

PMCID:: PMC6841655

Article PDF–1.1M

Select item 63834462.

The Prodigal Compound: Return of Ribosyl 1,5-Bisphosphate as an Important Player in Metabolism

Bjarne Hove-Jensen, Ditlev E. Brodersen, M. Cemre Manav

Microbiol Mol Biol Rev. 2019 Mar; 83(1): e00040-18. Published online 2018 Dec 19. doi: 10.1128/MMBR.00040-18

PMCID:: PMC6383446

Article PDF–6.3M

Select item 60473683.

Feature selection for gene prediction in metagenomic fragments

Amani Al-Ajlan, Achraf El Allali

BioData Min. 2018; 11: 9. Published online 2018 Jun 7. doi: 10.1186/s13040-018-0170-z

PMCID:: PMC6047368

Article PDF–781K

Select item 57324004.

Complete genome sequence analysis of Archaeoglobus fulgidus strain 7324 (DSM 8774), a hyperthermophilic archaeal sulfate reducer from a North Sea oil field

Nils-Kåre Birkeland, Peter Schönheit, Lianna Poghosyan, Anne Fiebig, Hans-Peter Klenk

Stand Genomic Sci. 2017; 12: 79. Published online 2017 Dec 16. doi: 10.1186/s40793-017-0296-5

PMCID:: PMC5732400

Article PDF–1.3M

Select item 50542225.

A Method for Identification of Selenoprotein Genes in Archaeal Genomes

Mingfeng Li, Yanzhao Huang, Yi Xiao

Genomics Proteomics Bioinformatics. 2009 Jun; 7(1-2): 62–70. Published online 2009 Jul 8. doi: 10.1016/S1672-0229(08)60034-0

PMCID:: PMC5054222

Article PDF–759K

Select item 45751126.

Serine 363 of a Hydrophobic Region of Archaeal Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase from Archaeoglobus fulgidus and Thermococcus kodakaraensis Affects CO₂/O₂ Substrate Specificity and Oxygen Sensitivity

Nathan E. Kreel, F. Robert Tabita

PLoS One. 2015; 10(9): e0138351. Published online 2015 Sep 18. doi: 10.1371/journal.pone.0138351

PMCID:: PMC4575112

Article PDF–4.5M

Select item 44812217.

Combined Crystal Structure of a Type I Cohesin: MUTATION AND AFFINITY BINDING STUDIES REVEAL STRUCTURAL DETERMINANTS OF COHESIN-DOCKERIN SPECIFICITIES

Kate Cameron, Jonathan Y. Weinstein, Olga Zhivin, Pedro Bule, Sarel J. Fleishman, Victor D. Alves, Harry J. Gilbert, Luís M. A. Ferreira, Carlos M. G. A. Fontes, Edward A. Bayer, Shabir Najmudin

J Biol Chem. 2015 Jun 26; 290(26): 16215–16225. Published online 2015 May 1. doi: 10.1074/jbc.M115.653303

PMCID:: PMC4481221

Article PDF–2.4M

Select item 43908878.

Phylogeny and Taxonomy of Archaea: A Comparison of the Whole-Genome-Based CVTree Approach with 16S rRNA Sequence Analysis

Guanghong Zuo, Zhao Xu, Bailin Hao

Life (Basel) 2015 Mar; 5(1): 949–968. Published online 2015 Mar 17. doi: 10.3390/life5010949

PMCID:: PMC4390887

Article PDF–1019K

Select item 41687029.

Assembly-free genome comparison based on next-generation sequencing reads and variable length patterns

Matteo Comin, Michele Schimd

BMC Bioinformatics. 2014; 15(Suppl 9): S1. Published online 2014 Sep 10. doi: 10.1186/1471-2105-15-S9-S1

PMCID:: PMC4168702

Article PDF–676K

Select item 416401010.

Ori-Finder 2, an integrated tool to predict replication origins in the archaeal genomes

Hao Luo, Chun-Ting Zhang, Feng Gao

Front Microbiol. 2014; 5: 482. Published online 2014 Sep 15. doi: 10.3389/fmicb.2014.00482

PMCID:: PMC4164010

Article PDF–1.9M

Select item 375397411.

Application of Denaturing High-Performance Liquid Chromatography for Monitoring Sulfate-Reducing Bacteria in Oil Fields

Outi Priha, Mari Nyyssönen, Malin Bomberg, Arja Laitila, Jaakko Simell, Anu Kapanen, Riikka Juvonen

Appl Environ Microbiol. 2013 Sep; 79(17): 5186–5196. doi: 10.1128/AEM.01015-13

PMCID:: PMC3753974

Article PDF–1.8M

Select item 361208212.

Pyrosequencing Reveals High-Temperature Cellulolytic Microbial Consortia in Great Boiling Spring after In Situ Lignocellulose Enrichment

Joseph P. Peacock, Jessica K. Cole, Senthil K. Murugapiran, Jeremy A. Dodsworth, Jenny C. Fisher, Duane P. Moser, Brian P. Hedlund

PLoS One. 2013; 8(3): e59927. Published online 2013 Mar 29. doi: 10.1371/journal.pone.0059927

PMCID:: PMC3612082

Article PDF–1.1M

Select item 352648413.

Athenia L. Oldham, Kathleen E. Duncan

PLoS One. 2012; 7(12): e51931. Published online 2012 Dec 19. doi: 10.1371/journal.pone.0051931

PMCID:: PMC3526484

Article PDF–424K

Select item 329010214.

Conserved Signal Peptide Recognition Systems across the Prokaryotic Domains

Sarah J. Coulthurst, Alice Dawson, William N. Hunter, Frank Sargent

Biochemistry. 2012 Feb 28; 51(8): 1678–1686. Published online 2012 Jan 30. doi: 10.1021/bi201852d

PMCID:: PMC3290102

Article PDF–4.7M

Select item 326901215.

DNA Replication and Strand Asymmetry in Prokaryotic and Mitochondrial Genomes

Xuhua Xia

Curr Genomics. 2012 Mar; 13(1): 16–27. Published online 2012 Mar. doi: 10.2174/138920212799034776

PMCID:: PMC3269012

Article PDF–275K

Select item 316542516.

Trophic Links between the Acetogen Clostridium glycolicum KHa and the Fermentative Anaerobe Bacteroides xylanolyticus KHb, Isolated from Hawaiian Forest Soil

Sindy Hunger, Anita S. Gößner, Harold L. Drake

Appl Environ Microbiol. 2011 Sep; 77(17): 6281–6285. doi: 10.1128/AEM.05519-11

PMCID:: PMC3165425

Article PDF–663K

Select item 290160017.

Carbon Monoxide as an Electron Donor for the Biological Reduction of Sulphate

Sofiya N. Parshina, Jan Sipma, Anne Meint Henstra, Alfons J. M. Stams

Int J Microbiol. 2010; 2010: 319527. Published online 2010 Jun 14. doi: 10.1155/2010/319527

PMCID:: PMC2901600

Article PDF–542K

Select item 287300218.

The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods

Peter G. Foster, Cymon J. Cox, T. Martin Embley

Philos Trans R Soc Lond B Biol Sci. 2009 Aug 12; 364(1527): 2197–2207. doi: 10.1098/rstb.2009.0034

PMCID:: PMC2873002

Article PDF–500K

Select item 279944919.

In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study

Reed Taffs, John E Aston, Kristen Brileya, Zackary Jay, Christian G Klatt, Shawn McGlynn, Natasha Mallette, Scott Montross, Robin Gerlach, William P Inskeep, David M Ward, Ross P Carlson

BMC Syst Biol. 2009; 3: 114. Published online 2009 Dec 10. doi: 10.1186/1752-0509-3-114