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Items: 20

Select item 63834461.

The Prodigal Compound: Return of Ribosyl 1,5-Bisphosphate as an Important Player in Metabolism

Bjarne Hove-Jensen, Ditlev E. Brodersen, M. Cemre Manav

Microbiol Mol Biol Rev. 2019 Mar; 83(1): e00040-18. Published online 2018 Dec 19. doi: 10.1128/MMBR.00040-18

PMCID:: PMC6383446

Abstract Article PDF–6.3M

Select item 53154692.

Genomic composition and dynamics among Methanomicrobiales predict adaptation to contrasting environments

Patrick Browne, Hideyuki Tamaki, Nikos Kyrpides, Tanja Woyke, Lynne Goodwin, Hiroyuki Imachi, Suzanna Bräuer, Joseph B Yavitt, Wen-Tso Liu, Stephen Zinder, Hinsby Cadillo-Quiroz

ISME J. 2017 Jan; 11(1): 87–99. Published online 2016 Aug 23. doi: 10.1038/ismej.2016.104

PMCID:: PMC5315469

Abstract Article PDF–1.1M

Select item 50542223.

A Method for Identification of Selenoprotein Genes in Archaeal Genomes

Mingfeng Li, Yanzhao Huang, Yi Xiao

Genomics Proteomics Bioinformatics. 2009 Jun; 7(1-2): 62–70. Published online 2009 Jul 8. doi: 10.1016/S1672-0229(08)60034-0

PMCID:: PMC5054222

Abstract Article PDF–759K

Select item 47044114.

Complete genome sequence of Methanospirillum hungatei type strain JF1

Robert P. Gunsalus, Lauren E. Cook, Bryan Crable, Lars Rohlin, Erin McDonald, Housna Mouttaki, Jessica R. Sieber, Nicole Poweleit, Hong Zhou, Alla L. Lapidus, Hajnalka Erzsebet Daligault, Miriam Land, Paul Gilna, Natalia Ivanova, Nikos Kyrpides, David E. Culley, Michael J. McInerney

Stand Genomic Sci. 2016; 11: 2. Published online 2016 Jan 6. doi: 10.1186/s40793-015-0124-8

PMCID:: PMC4704411

Abstract Article PDF–1.9M

Select item 43908875.

Phylogeny and Taxonomy of Archaea: A Comparison of the Whole-Genome-Based CVTree Approach with 16S rRNA Sequence Analysis

Guanghong Zuo, Zhao Xu, Bailin Hao

Life (Basel) 2015 Mar; 5(1): 949–968. Published online 2015 Mar 17. doi: 10.3390/life5010949

PMCID:: PMC4390887

Abstract Article PDF–1019K

Select item 43241406.

Proteomic analysis reveals metabolic and regulatory systems involved in the syntrophic and axenic lifestyle of Syntrophomonas wolfei

Jessica R. Sieber, Bryan R. Crable, Cody S. Sheik, Gregory B. Hurst, Lars Rohlin, Robert P. Gunsalus, Michael J. McInerney

Front Microbiol. 2015; 6: 115. Published online 2015 Feb 11. doi: 10.3389/fmicb.2015.00115

PMCID:: PMC4324140

Abstract Article PDF–2.0M

Select item 42752557.

Degradation of Acetaldehyde and Its Precursors by Pelobacter carbinolicus and P. acetylenicus

Alexander Schmidt, Marco Frensch, David Schleheck, Bernhard Schink, Nicolai Müller

PLoS One. 2014; 9(12): e115902. Published online 2014 Dec 23. doi: 10.1371/journal.pone.0115902

PMCID:: PMC4275255

Abstract Article PDF–846K

Select item 39605328.

Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community

Mallory Embree, Harish Nagarajan, Narjes Movahedi, Hamidreza Chitsaz, Karsten Zengler

ISME J. 2014 Apr; 8(4): 757–767. Published online 2013 Oct 24. doi: 10.1038/ismej.2013.187

PMCID:: PMC3960532

Abstract Article PDF–1.1M

Select item 37812699.

Microbial community structure in a biogas digester utilizing the marine energy crop Saccharina latissima

Phillip B. Pope, Vivekanand Vivekanand, Vincent G. H. Eijsink, Svein J. Horn

3 Biotech. 2013 Oct; 3(5): 407–414. Published online 2012 Oct 25. doi: 10.1007/s13205-012-0097-x

PMCID:: PMC3781269

Abstract Article PDF–367K

Select item 370038310.

Structural, mass and elemental analyses of storage granules in methanogenic archaeal cells

Daniel B. Toso, Anne M. Henstra, Robert P. Gunsalus, Z. Hong Zhou

Environ Microbiol. Author manuscript; available in PMC 2013 Jul 3.

Published in final edited form as: Environ Microbiol. 2011 Sep; 13(9): 2587–2599. Published online 2011 Aug 19. doi: 10.1111/j.1462-2920.2011.02531.x

PMCID:: PMC3700383

Abstract Article PDF–6.8M

Select item 365863611.

Characterization of a Methanogenic Community within an Algal Fed Anaerobic Digester

Joshua T. Ellis, Cody Tramp, Ronald C. Sims, Charles D. Miller

ISRN Microbiol. 2012; 2012: 753892. Published online 2012 Jun 21. doi: 10.5402/2012/753892

PMCID:: PMC3658636

Abstract Article PDF–1.5M

Select item 314651212.

Genome Sequence of a Mesophilic Hydrogenotrophic Methanogen Methanocella paludicola, the First Cultivated Representative of the Order Methanocellales

Sanae Sakai, Yoshihiro Takaki, Shigeru Shimamura, Mitsuo Sekine, Takahisa Tajima, Hiroki Kosugi, Natsuko Ichikawa, Eiji Tasumi, Aiko T. Hiraki, Ai Shimizu, Yumiko Kato, Rika Nishiko, Koji Mori, Nobuyuki Fujita, Hiroyuki Imachi, Ken Takai

PLoS One. 2011; 6(7): e22898. Published online 2011 Jul 29. doi: 10.1371/journal.pone.0022898

PMCID:: PMC3146512

Abstract Article PDF–723K

Select item 273596713.

Estimating the Fraction of Non-Coding RNAs in Mammalian Transcriptomes

Yurong Xin, Giulio Quarta, Hin Hark Gan, Tamar Schlick

Bioinform Biol Insights. 2008; 2: 75–94. Published online 2008 Mar 1. doi: 10.4137/bbi.s443

PMCID:: PMC2735967

Abstract Article PDF–670K

Select item 268616114.

Genomic Characterization of Methanomicrobiales Reveals Three Classes of Methanogens

Iain Anderson, Luke E. Ulrich, Boguslaw Lupa, Dwi Susanti, Iris Porat, Sean D. Hooper, Athanasios Lykidis, Magdalena Sieprawska-Lupa, Lakshmi Dharmarajan, Eugene Goltsman, Alla Lapidus, Elizabeth Saunders, Cliff Han, Miriam Land, Susan Lucas, Biswarup Mukhopadhyay, William B. Whitman, Carl Woese, James Bristow, Nikos Kyrpides

PLoS One. 2009; 4(6): e5797. Published online 2009 Jun 4. doi: 10.1371/journal.pone.0005797