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Select item 69560231.

Serine Protease Autotransporters of the Enterobacteriaceae (SPATEs): Out and About and Chopping It Up

Pravil Pokharel, Hajer Habouria, Hicham Bessaiah, Charles M. Dozois

Microorganisms. 2019 Dec; 7(12): 594. Published online 2019 Nov 21. doi: 10.3390/microorganisms7120594

PMCID:: PMC6956023

Abstract Article PDF–2.6M

Select item 68942932.

Genetic boundaries delineate the potential human pathogen Salmonella bongori into discrete lineages: divergence and speciation

Xiaoyu Wang, Songling Zhu, Jian-Hua Zhao, Hong-Xia Bao, Huidi Liu, Tie-Min Ding, Gui-Rong Liu, Yong-Guo Li, Randal N. Johnston, Feng-Lin Cao, Le Tang, Shu-Lin Liu

BMC Genomics. 2019; 20: 930. Published online 2019 Dec 4. doi: 10.1186/s12864-019-6259-z

PMCID:: PMC6894293

Abstract Article PDF–1.8M

Select item 50379743.

Next generation sequencing data of a defined microbial mock community

Esther Singer, Bill Andreopoulos, Robert M. Bowers, Janey Lee, Shweta Deshpande, Jennifer Chiniquy, Doina Ciobanu, Hans-Peter Klenk, Matthew Zane, Christopher Daum, Alicia Clum, Jan-Fang Cheng, Alex Copeland, Tanja Woyke

Sci Data. 2016; 3: 160081. Published online 2016 Sep 27. doi: 10.1038/sdata.2016.81

PMCID:: PMC5037974

Abstract Article PDF–1.3M

Select item 45588614.

Rare Events of Intragenus and Intraspecies Horizontal Transfer of the 16S rRNA Gene

Ren-Mao Tian, Lin Cai, Wei-Peng Zhang, Hui-Luo Cao, Pei-Yuan Qian

Genome Biol Evol. 2015 Aug; 7(8): 2310–2320. Published online 2015 Jul 27. doi: 10.1093/gbe/evv143

PMCID:: PMC4558861

Abstract Article PDF–776K

Select item 45110005.

Complete genome sequence of Salmonella enterica subspecies arizonae str. RKS2983

Chun-Xiao Wang, Song-Ling Zhu, Xiao-Yu Wang, Ye Feng, Bailiang Li, Yong-Guo Li, Randal N Johnston, Gui-Rong Liu, Jin Zhou, Shu-Lin Liu

Stand Genomic Sci. 2015; 10: 30. Published online 2015 Jun 3. doi: 10.1186/s40793-015-0015-z

PMCID:: PMC4511000

Abstract Article PDF–1.6M

Select item 41380826.

CTAG-Containing Cleavage Site Profiling to Delineate Salmonella into Natural Clusters

Le Tang, Wei-Qiao Liu, Xin Fang, Qiang Sun, Song-Ling Zhu, Chun-Xiao Wang, Xiao-Yu Wang, Yong-Guo Li, Da-Ling Zhu, Kenneth E. Sanderson, Randal N. Johnston, Gui-Rong Liu, Shu-Lin Liu

PLoS One. 2014; 9(8): e103388. Published online 2014 Aug 19. doi: 10.1371/journal.pone.0103388

PMCID:: PMC4138082

Abstract Article PDF–1.9M

Select item 41361697.

Development of a Rapid Microarray-Based DNA Subtyping Assay for the Alleles of Shiga Toxins 1 and 2 of Escherichia coli

Lutz Geue, Bettina Stieber, Stefan Monecke, Ines Engelmann, Florian Gunzer, Peter Slickers, Sascha D. Braun, Ralf Ehricht

J Clin Microbiol. 2014 Aug; 52(8): 2898–2904. doi: 10.1128/JCM.01048-14

PMCID:: PMC4136169

Abstract Article PDF–729K

Select item 41081248.

Detection, identification and quantification of Campylobacter jejuni, coli and lari in food matrices all at once using multiplex qPCR

Lucie Vondrakova, Jarmila Pazlarova, Katerina Demnerova

Gut Pathog. 2014; 6: 12. Published online 2014 May 9. doi: 10.1186/1757-4749-6-12

PMCID:: PMC4108124

Abstract Article PDF–256K

Select item 40947859.

Differential efficiency in exogenous DNA acquisition among closely related Salmonella strains: implications in bacterial speciation

Hong-Xia Bao, Le Tang, Lu Yu, Xu-Yao Wang, Yang Li, Xia Deng, Yong-Guo Li, Ang Li, Da-Ling Zhu, Randal N Johnston, Gui-Rong Liu, Ye Feng, Shu-Lin Liu

BMC Microbiol. 2014; 14: 157. Published online 2014 Jun 14. doi: 10.1186/1471-2180-14-157

PMCID:: PMC4094785

Abstract Article PDF–640K

Select item 383130910.

A small RNA activates CFA synthase by isoform-specific mRNA stabilization

Kathrin Sophie Fröhlich, Kai Papenfort, Agnes Fekete, Jörg Vogel

EMBO J. 2013 Nov 13; 32(22): 2963–2979. Published online 2013 Oct 18. doi: 10.1038/emboj.2013.222

PMCID:: PMC3831309

Abstract Article PDF–1.3M

Select item 381037711.

Phylogenomic Analysis Identifies Gene Gains That Define Salmonella enterica Subspecies I

E. Kurt Lienau, Jeffrey M. Blazar, Charles Wang, Eric W. Brown, Robert Stones, Steven Musser, Marc W. Allard

PLoS One. 2013; 8(10): e76821. Published online 2013 Oct 28. doi: 10.1371/journal.pone.0076821

PMCID:: PMC3810377

Abstract Article PDF–234K

Select item 375393212.

An RpoS-dependent sRNA regulates the expression of a chaperone involved in protein folding

Inês Jesus Silva, Álvaro Darío Ortega, Sandra Cristina Viegas, Francisco García-del Portillo, Cecília Maria Arraiano

RNA. 2013 Sep; 19(9): 1253–1265. doi: 10.1261/rna.039537.113

PMCID:: PMC3753932

Abstract Article PDF–1.1M

Select item 359132313.

Virulence Gene Profiling and Pathogenicity Characterization of Non-Typhoidal Salmonella Accounted for Invasive Disease in Humans

Jotham Suez, Steffen Porwollik, Amir Dagan, Alex Marzel, Yosef Ilan Schorr, Prerak T. Desai, Vered Agmon, Michael McClelland, Galia Rahav, Ohad Gal-Mor

PLoS One. 2013; 8(3): e58449. Published online 2013 Mar 7. doi: 10.1371/journal.pone.0058449

PMCID:: PMC3591323

Abstract Article PDF–2.0M

Select item 358934314.

T3_MM: A Markov Model Effectively Classifies Bacterial Type III Secretion Signals

Yejun Wang, Ming'an Sun, Hongxia Bao, Aaron P. White

PLoS One. 2013; 8(3): e58173. Published online 2013 Mar 5. doi: 10.1371/journal.pone.0058173

PMCID:: PMC3589343

Abstract Article PDF–639K

Select item 357541215.

Identification of Genes to Differentiate Closely Related Salmonella Lineages

Qing-Hua Zou, Ren-Qing Li, Ye-Jun Wang, Shu-Lin Liu

PLoS One. 2013; 8(2): e55988. Published online 2013 Feb 18. doi: 10.1371/journal.pone.0055988

PMCID:: PMC3575412

Abstract Article PDF–738K

Select item 354860416.

The automatic annotation of bacterial genomes

Emily J. Richardson, Mick Watson

Brief Bioinform. 2013 Jan; 14(1): 1–12. Published online 2012 Feb 9. doi: 10.1093/bib/bbs007

PMCID:: PMC3548604

Abstract Article PDF–467K

Select item 341182917.

Genome-Wide Detection of Spontaneous Chromosomal Rearrangements in Bacteria

Song Sun, Rongqin Ke, Diarmaid Hughes, Mats Nilsson, Dan I. Andersson

PLoS One. 2012; 7(8): e42639. Published online 2012 Aug 3. doi: 10.1371/journal.pone.0042639

PMCID:: PMC3411829

Abstract Article PDF–541K

Select item 340850418.

A Genomic Island in Salmonella enterica ssp. salamae Provides New Insights on the Genealogy of the Locus of Enterocyte Effacement

P. Scott Chandry, Simon Gladman, Sean C. Moore, Torsten Seemann, Keith A. Crandall, Narelle Fegan

PLoS One. 2012; 7(7): e41615. Published online 2012 Jul 30. doi: 10.1371/journal.pone.0041615

Correction in:: PLoS One. 2012; 7(11): 10.1371/annotation/bdce3895-9160-4f51-a162-4811b3e6d2e1.

PMCID:: PMC3408504

Abstract Article PDF–681K

Select item 329666519.

A cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation

Jingwei Jiang, Jun Li, Hoi Shan Kwan, Chun Hang Au, Patrick Tik Wan Law, Lei Li, Kai Man Kam, Julia Mei Lun Ling, Frederick C Leung

BMC Res Notes. 2012; 5: 80. Published online 2012 Jan 31. doi: 10.1186/1756-0500-5-80

PMCID:: PMC3296665

Abstract Article PDF–468K

Select item 317650020.

Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica

Henk C den Bakker, Andrea I Moreno Switt, Gregory Govoni, Craig A Cummings, Matthew L Ranieri, Lovorka Degoricija, Karin Hoelzer, Lorraine D Rodriguez-Rivera, Stephanie Brown, Elena Bolchacova, Manohar R Furtado, Martin Wiedmann

BMC Genomics. 2011; 12: 425. Published online 2011 Aug 22. doi: 10.1186/1471-2164-12-425