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Select item 69466811.

The gastrointestinal pathogen Campylobacter jejuni metabolizes sugars with potential help from commensal Bacteroides vulgatus

Jolene M. Garber, Harald Nothaft, Ben Pluvinage, Martin Stahl, Xiaoming Bian, Sara Porfirio, Amber Enriquez, James Butcher, Hua Huang, John Glushka, Eric Line, John A. Gerlt, Parastoo Azadi, Alain Stintzi, Alisdair B. Boraston, Christine M. Szymanski

Commun Biol. 2020; 3: 2. Published online 2020 Jan 7. doi: 10.1038/s42003-019-0727-5

PMCID:: PMC6946681

Abstract Article PDF–1.7M

Select item 67385822.

Baseline human gut microbiota profile in healthy people and standard reporting template

Charles H. King, Hiral Desai, Allison C. Sylvetsky, Jonathan LoTempio, Shant Ayanyan, Jill Carrie, Keith A. Crandall, Brian C. Fochtman, Lusine Gasparyan, Naila Gulzar, Paul Howell, Najy Issa, Konstantinos Krampis, Lopa Mishra, Hiroki Morizono, Joseph R. Pisegna, Shuyun Rao, Yao Ren, Vahan Simonyan, Krista Smith, Sharanjit VedBrat, Michael D. Yao, Raja Mazumder

PLoS One. 2019; 14(9): e0206484. Published online 2019 Sep 11. doi: 10.1371/journal.pone.0206484

PMCID:: PMC6738582

Abstract Article PDF–2.6M

Select item 62842203.

Diet supplementation with an organic acids-based formulation affects gut microbiota and expression of gut barrier genes in broilers

Irida Palamidi, Konstantinos C. Mountzouris

Anim Nutr. 2018 Dec; 4(4): 367–377. Published online 2018 Apr 16. doi: 10.1016/j.aninu.2018.03.007

PMCID:: PMC6284220

Abstract Article PDF–467K

Select item 62813024.

Comparative genomics of transport proteins in seven Bacteroides species

Hassan Zafar, Milton H. Saier, Jr.

PLoS One. 2018; 13(12): e0208151. Published online 2018 Dec 5. doi: 10.1371/journal.pone.0208151

PMCID:: PMC6281302

Abstract Article PDF–748K

Select item 61587255.

Molecular Alteration Analysis of Human Gut Microbial Composition in Graves' disease Patients

Hafiz Muhammad Ishaq, Imran Shair Mohammad, Muhammad Shahzad, Chaofeng Ma, Muhammad Asif Raza, Xiaokang Wu, Hui Guo, Peijie Shi, Jiru Xu

Int J Biol Sci. 2018; 14(11): 1558–1570. Published online 2018 Sep 7. doi: 10.7150/ijbs.24151

PMCID:: PMC6158725

Abstract Article PDF–1.1M

Select item 58808776.

Fecal Enterobacteriales enrichment is associated with increased in vivo intestinal permeability in humans

Camilla Pedersen, Umer Z. Ijaz, Edith Gallagher, Felicity Horton, Richard J. Ellis, Etana Jaiyeola, Thibaut Duparc, David Russell‐Jones, Paul Hinton, Patrice D. Cani, Roberto M. La Ragione, M. Denise Robertson

Physiol Rep. 2018 Apr; 6(7): e13649. Published online 2018 Apr 2. doi: 10.14814/phy2.13649

PMCID:: PMC5880877

Abstract Article PDF–568K

Select item 56095897.

The Glycolytic Versatility of Bacteroides uniformis CECT 7771 and Its Genome Response to Oligo and Polysaccharides

Alfonso Benítez-Páez, Eva M. Gómez del Pulgar, Yolanda Sanz

Front Cell Infect Microbiol. 2017; 7: 383. Published online 2017 Aug 25. doi: 10.3389/fcimb.2017.00383

PMCID:: PMC5609589

Abstract Article PDF–2.8M

Select item 55241388.

The effects of micronutrient deficiencies on bacterial species from the human gut microbiota

Matthew C. Hibberd, Meng Wu, Dmitry A. Rodionov, Xiaoqing Li, Jiye Cheng, Nicholas W. Griffin, Michael J. Barratt, Richard J. Giannone, Robert L. Hettich, Andrei L. Osterman, Jeffrey I. Gordon

Sci Transl Med. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Sci Transl Med. 2017 May 17; 9(390): eaal4069. doi: 10.1126/scitranslmed.aal4069

PMCID:: PMC5524138

Abstract Article PDF–2.1M

Select item 54502489.

Analysis of EAWAG-BBD pathway prediction system for the identification of malathion degrading microbes

Subramaniam Sivakumar, Palanivel Anitha, Balsubramanian Ramesh, Gopal Suresh

Bioinformation. 2017; 13(3): 73–77. Published online 2017 Mar 31. doi: 10.6026/97320630013073

PMCID:: PMC5450248

Abstract Article PDF–717K

Select item 498453710.

Expression of arsenic resistance genes in the obligate anaerobe Bacteroides vulgatus ATCC 8482, a gut microbiome bacterium

Jiaojiao Li, Goutam Mandal, Barry P. Rosen

Anaerobe. Author manuscript; available in PMC 2017 Jun 1.

Published in final edited form as: Anaerobe. 2016 Jun; 39: 117–123. Published online 2016 Mar 31. doi: 10.1016/j.anaerobe.2016.03.012

PMCID:: PMC4984537

Abstract Article PDF–1.7M

Select item 497073011.

The Application of Magnetic Bead Selection to Investigate Interactions between the Oral Microbiota and Salivary Immunoglobulins

Tejal Madhwani, Andrew J. McBain

PLoS One. 2016; 11(8): e0158288. Published online 2016 Aug 2. doi: 10.1371/journal.pone.0158288

PMCID:: PMC4970730

Abstract Article PDF–1003K

Select item 473076612.

Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer

Alfonso Benítez-Páez, Kevin J. Portune, Yolanda Sanz

Gigascience. 2016; 5: 4. Published online 2016 Jan 28. doi: 10.1186/s13742-016-0111-z

PMCID:: PMC4730766

Abstract Article PDF–939K

Select item 459320613.

An accurate and efficient experimental approach for characterization of the complex oral microbiota

Wei Zheng, Maria Tsompana, Angela Ruscitto, Ashu Sharma, Robert Genco, Yijun Sun, Michael J. Buck

Microbiome. 2015; 3: 48. Published online 2015 Oct 5. doi: 10.1186/s40168-015-0110-9

PMCID:: PMC4593206

Abstract Article PDF–1.1M

Select item 453649014.

Evolutionary conservation analysis between the essential and nonessential genes in bacterial genomes

Hao Luo, Feng Gao, Yan Lin

Sci Rep. 2015; 5: 13210. Published online 2015 Aug 14. doi: 10.1038/srep13210

PMCID:: PMC4536490

Abstract Article PDF–895K

Select item 443228315.

Characterizing the Interactions between a Naturally Primed Immunoglobulin A and Its Conserved Bacteroides thetaiotaomicron Species-specific Epitope in Gnotobiotic Mice

Daniel A. Peterson, Joseph D. Planer, Janaki L. Guruge, Lai Xue, Whitt Downey-Virgin, Andrew L. Goodman, Henning Seedorf, Jeffrey I. Gordon

J Biol Chem. 2015 May 15; 290(20): 12630–12649. Published online 2015 Mar 20. doi: 10.1074/jbc.M114.633800

PMCID:: PMC4432283

Abstract Article PDF–4.7M

Select item 414897816.

Genome sequence and description of Bacteroides timonensis sp. nov.

Dhamodharan Ramasamy, Jean-Christophe Lagier, Morgane Rossi-Tamisier, Anne Pfleiderer, Caroline Michelle, Carine Couderc, Didier Raoult, Pierre-Edouard Fournier

Stand Genomic Sci. 2014 Jun 15; 9(3): 1181–1197. Published online 2014 Mar 15. doi: 10.4056/sigs.5389564

PMCID:: PMC4148978

Abstract Article PDF–1.5M

Select item 407349017.

Evidence of Extensive DNA Transfer between Bacteroidales Species within the Human Gut

Michael J. Coyne, Naamah Levy Zitomersky, Abigail Manson McGuire, Ashlee M. Earl, Laurie E. Comstock

mBio. 2014 May-Jun; 5(3): e01305-14. Published online 2014 Jun 17. doi: 10.1128/mBio.01305-14

PMCID:: PMC4073490

Abstract Article PDF–575K

Select item 397725118.

Tackling soil diversity with the assembly of large, complex metagenomes

Adina Chuang Howe, Janet K. Jansson, Stephanie A. Malfatti, Susannah G. Tringe, James M. Tiedje, C. Titus Brown

Proc Natl Acad Sci U S A. 2014 Apr 1; 111(13): 4904–4909. Published online 2014 Mar 14. doi: 10.1073/pnas.1402564111

Correction in:: Proc Natl Acad Sci U S A. 2014 Apr 22; 111(16): 6115.

PMCID:: PMC3977251

Abstract Article PDF–717K

Select item 391110119.

Oral Bacterial Communities in Individuals with Type 2 Diabetes Who Live in Southern Thailand

Kanokporn Kampoo, Rawee Teanpaisan, Ruth G. Ledder, Andrew J. McBain

Appl Environ Microbiol. 2014 Jan; 80(2): 662–671. doi: 10.1128/AEM.02821-13

PMCID:: PMC3911101

Abstract Article PDF–820K

Select item 381554820.

Ferritin-like family proteins in the anaerobe Bacteroides fragilis: when an oxygen storm is coming, take your iron to the shelter

Edson R. Rocha, C. Jeffrey Smith

Biometals. Author manuscript; available in PMC 2014 Aug 1.

Published in final edited form as: Biometals. 2013 Aug; 26(4): 10.1007/s10534-013-9650-2. Published online 2013 Jul 11. doi: 10.1007/s10534-013-9650-2