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Items: 19

Select item 69466811.

The gastrointestinal pathogen Campylobacter jejuni metabolizes sugars with potential help from commensal Bacteroides vulgatus

Jolene M. Garber, Harald Nothaft, Ben Pluvinage, Martin Stahl, Xiaoming Bian, Sara Porfirio, Amber Enriquez, James Butcher, Hua Huang, John Glushka, Eric Line, John A. Gerlt, Parastoo Azadi, Alain Stintzi, Alisdair B. Boraston, Christine M. Szymanski

Commun Biol. 2020; 3: 2. Published online 2020 Jan 7. doi: 10.1038/s42003-019-0727-5

PMCID:: PMC6946681

Abstract Article PDF–1.7M

Select item 62842202.

Diet supplementation with an organic acids-based formulation affects gut microbiota and expression of gut barrier genes in broilers

Irida Palamidi, Konstantinos C. Mountzouris

Anim Nutr. 2018 Dec; 4(4): 367–377. Published online 2018 Apr 16. doi: 10.1016/j.aninu.2018.03.007

PMCID:: PMC6284220

Abstract Article PDF–467K

Select item 62813023.

Comparative genomics of transport proteins in seven Bacteroides species

Hassan Zafar, Milton H. Saier, Jr.

PLoS One. 2018; 13(12): e0208151. Published online 2018 Dec 5. doi: 10.1371/journal.pone.0208151

PMCID:: PMC6281302

Abstract Article PDF–748K

Select item 61587254.

Molecular Alteration Analysis of Human Gut Microbial Composition in Graves' disease Patients

Hafiz Muhammad Ishaq, Imran Shair Mohammad, Muhammad Shahzad, Chaofeng Ma, Muhammad Asif Raza, Xiaokang Wu, Hui Guo, Peijie Shi, Jiru Xu

Int J Biol Sci. 2018; 14(11): 1558–1570. Published online 2018 Sep 7. doi: 10.7150/ijbs.24151

PMCID:: PMC6158725

Abstract Article PDF–1.1M

Select item 58808775.

Fecal Enterobacteriales enrichment is associated with increased in vivo intestinal permeability in humans

Camilla Pedersen, Umer Z. Ijaz, Edith Gallagher, Felicity Horton, Richard J. Ellis, Etana Jaiyeola, Thibaut Duparc, David Russell‐Jones, Paul Hinton, Patrice D. Cani, Roberto M. La Ragione, M. Denise Robertson

Physiol Rep. 2018 Apr; 6(7): e13649. Published online 2018 Apr 2. doi: 10.14814/phy2.13649

PMCID:: PMC5880877

Abstract Article PDF–568K

Select item 55241386.

The effects of micronutrient deficiencies on bacterial species from the human gut microbiota

Matthew C. Hibberd, Meng Wu, Dmitry A. Rodionov, Xiaoqing Li, Jiye Cheng, Nicholas W. Griffin, Michael J. Barratt, Richard J. Giannone, Robert L. Hettich, Andrei L. Osterman, Jeffrey I. Gordon

Sci Transl Med. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Sci Transl Med. 2017 May 17; 9(390): eaal4069. doi: 10.1126/scitranslmed.aal4069

PMCID:: PMC5524138

Abstract Article PDF–2.1M

Select item 49845377.

Expression of arsenic resistance genes in the obligate anaerobe Bacteroides vulgatus ATCC 8482, a gut microbiome bacterium

Jiaojiao Li, Goutam Mandal, Barry P. Rosen

Anaerobe. Author manuscript; available in PMC 2017 Jun 1.

Published in final edited form as: Anaerobe. 2016 Jun; 39: 117–123. Published online 2016 Mar 31. doi: 10.1016/j.anaerobe.2016.03.012

PMCID:: PMC4984537

Abstract Article PDF–1.7M

Select item 47307668.

Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer

Alfonso Benítez-Páez, Kevin J. Portune, Yolanda Sanz

Gigascience. 2016; 5: 4. Published online 2016 Jan 28. doi: 10.1186/s13742-016-0111-z

PMCID:: PMC4730766

Abstract Article PDF–939K

Select item 45932069.

An accurate and efficient experimental approach for characterization of the complex oral microbiota

Wei Zheng, Maria Tsompana, Angela Ruscitto, Ashu Sharma, Robert Genco, Yijun Sun, Michael J. Buck

Microbiome. 2015; 3: 48. Published online 2015 Oct 5. doi: 10.1186/s40168-015-0110-9

PMCID:: PMC4593206

Abstract Article PDF–1.1M

Select item 453649010.

Evolutionary conservation analysis between the essential and nonessential genes in bacterial genomes

Hao Luo, Feng Gao, Yan Lin

Sci Rep. 2015; 5: 13210. Published online 2015 Aug 14. doi: 10.1038/srep13210

PMCID:: PMC4536490

Abstract Article PDF–895K

Select item 414897811.

Genome sequence and description of Bacteroides timonensis sp. nov.

Dhamodharan Ramasamy, Jean-Christophe Lagier, Morgane Rossi-Tamisier, Anne Pfleiderer, Caroline Michelle, Carine Couderc, Didier Raoult, Pierre-Edouard Fournier

Stand Genomic Sci. 2014 Jun 15; 9(3): 1181–1197. Published online 2014 Mar 15. doi: 10.4056/sigs.5389564

PMCID:: PMC4148978

Abstract Article PDF–1.5M

Select item 407349012.

Evidence of Extensive DNA Transfer between Bacteroidales Species within the Human Gut

Michael J. Coyne, Naamah Levy Zitomersky, Abigail Manson McGuire, Ashlee M. Earl, Laurie E. Comstock

mBio. 2014 May-Jun; 5(3): e01305-14. Published online 2014 Jun 17. doi: 10.1128/mBio.01305-14

PMCID:: PMC4073490

Abstract Article PDF–575K

Select item 397725113.

Tackling soil diversity with the assembly of large, complex metagenomes

Adina Chuang Howe, Janet K. Jansson, Stephanie A. Malfatti, Susannah G. Tringe, James M. Tiedje, C. Titus Brown

Proc Natl Acad Sci U S A. 2014 Apr 1; 111(13): 4904–4909. Published online 2014 Mar 14. doi: 10.1073/pnas.1402564111

Correction in:: Proc Natl Acad Sci U S A. 2014 Apr 22; 111(16): 6115.

PMCID:: PMC3977251

Abstract Article PDF–717K

Select item 377711214.

Distilled single-cell genome sequencing and de novo assembly for sparse microbial communities

Zeinab Taghavi, Narjes S. Movahedi, Sorin Drǎghici, Hamidreza Chitsaz

Bioinformatics. 2013 Oct 1; 29(19): 2395–2401. Published online 2013 Aug 5. doi: 10.1093/bioinformatics/btt420

PMCID:: PMC3777112

Abstract Article PDF–223K

Select item 323740915.

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

Patrick D. Schloss, Dirk Gevers, Sarah L. Westcott

PLoS One. 2011; 6(12): e27310. Published online 2011 Dec 14. doi: 10.1371/journal.pone.0027310

PMCID:: PMC3237409

Abstract Article PDF–725K

Select item 302360716.

Mucin-bacterial interactions in the human oral cavity and digestive tract

Muriel Derrien, Mark WJ van Passel, Jeroen HB van de Bovenkamp, Raymond G Schipper, Willem M de Vos, Jan Dekker

Gut Microbes. 2010 Jul-Aug; 1(4): 254–268. Published online 2010 Jun 23. doi: 10.4161/gmic.1.4.12778

PMCID:: PMC3023607

Abstract Article PDF–1.8M

Select item 302044317.

Development and Characterization of a Highly Specific and Sensitive SYBR Green Reverse Transcriptase PCR Assay for Detection of the 2009 Pandemic H1N1 Influenza Virus on the Basis of Sequence Signatures

Rafael A. Medina, Mark Rojas, Astrid Tuin, Stephen Huff, Marcela Ferres, Constanza Martinez-Valdebenito, Paula Godoy, Adolfo García-Sastre, Yuriy Fofanov, John SantaLucia, Jr.

J Clin Microbiol. 2011 Jan; 49(1): 335–344. Published online 2010 Nov 17. doi: 10.1128/JCM.01142-10

PMCID:: PMC3020443

Abstract Article PDF–1.0M

Select item 290171318.

Unsuitability of Quantitative Bacteroidales 16S rRNA Gene Assays for Discerning Fecal Contamination of Drinking Water

Paul W. J. J. van der Wielen, Gertjan Medema

Appl Environ Microbiol. 2010 Jul; 76(14): 4876–4881. Published online 2010 May 28. doi: 10.1128/AEM.03090-09

PMCID:: PMC2901713

Abstract Article PDF–64K

Select item 189257119.

Evolution of Symbiotic Bacteria in the Distal Human Intestine

Jian Xu, Michael A Mahowald, Ruth E Ley, Catherine A Lozupone, Micah Hamady, Eric C Martens, Bernard Henrissat, Pedro M Coutinho, Patrick Minx, Philippe Latreille, Holland Cordum, Andrew Van Brunt, Kyung Kim, Robert S Fulton, Lucinda A Fulton, Sandra W Clifton, Richard K Wilson, Robin D Knight, Jeffrey I Gordon

PLoS Biol. 2007 Jul; 5(7): e156. Published online 2007 Jun 19. doi: 10.1371/journal.pbio.0050156