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Select item 69786401.

mcr-Colistin Resistance Genes Mobilized by IncX4, IncHI2, and IncI2 Plasmids in Escherichia coli of Pigs and White Stork in Spain

Lourdes Migura-Garcia, Juan J. González-López, Jaime Martinez-Urtaza, J. R. Aguirre Sánchez, A. Moreno-Mingorance, A. Perez de Rozas, Ursula Höfle, Y. Ramiro, Narjol Gonzalez-Escalona

Front Microbiol. 2019; 10: 3072. Published online 2020 Jan 17. doi: 10.3389/fmicb.2019.03072

PMCID:: PMC6978640

Abstract Article PDF–2.0M

Select item 68942932.

Genetic boundaries delineate the potential human pathogen Salmonella bongori into discrete lineages: divergence and speciation

Xiaoyu Wang, Songling Zhu, Jian-Hua Zhao, Hong-Xia Bao, Huidi Liu, Tie-Min Ding, Gui-Rong Liu, Yong-Guo Li, Randal N. Johnston, Feng-Lin Cao, Le Tang, Shu-Lin Liu

BMC Genomics. 2019; 20: 930. Published online 2019 Dec 4. doi: 10.1186/s12864-019-6259-z

PMCID:: PMC6894293

Abstract Article PDF–1.8M

Select item 67975303.

Whole-Genome Sequence of Escherichia coli Serotype O157:H7 Strain ATCC 43888

Gaylen A. Uhlich, George C. Paoli, Xinmin Zhang, Elisa Andreozzi

Microbiol Resour Announc. 2019 Oct; 8(42): e00906-19. Published online 2019 Oct 17. doi: 10.1128/MRA.00906-19

PMCID:: PMC6797530

Abstract Article PDF–132K

Select item 67815734.

Visualizing and comparing circular genomes using the CGView family of tools

Paul Stothard, Jason R Grant, Gary Van Domselaar

Brief Bioinform. 2019 Jul; 20(4): 1576–1582. Published online 2017 Jul 26. doi: 10.1093/bib/bbx081

PMCID:: PMC6781573

Abstract Article PDF–1.2M

Select item 65622485.

Emergence and divergence of major lineages of Shiga-toxin-producing Escherichia coli in Australia

Danielle J. Ingle, Anders Gonçalves da Silva, Mary Valcanis, Susan A. Ballard, Torsten Seemann, Amy V. Jennison, Ivan Bastian, Rolf Wise, Martyn D. Kirk, Benjamin P. Howden, Deborah A. Williamson

Microb Genom. 2019 May; 5(5): e000268. Published online 2019 May 20. doi: 10.1099/mgen.0.000268

PMCID:: PMC6562248

Abstract Article PDF–2.9M

Select item 65536136.

Multiple-locus variable-number tandem repeat analysis for strain discrimination of non-O157 Shiga toxin-producing Escherichia coli

Chris Timmons, Eija Trees, Efrain M. Ribot, Peter Gerner-Smidt, Patti LaFon, Sung Im, Li Maria Ma

J Microbiol Methods. Author manuscript; available in PMC 2019 Jun 6.

Published in final edited form as: J Microbiol Methods. 2016 Jun; 125: 70–80. Published online 2016 Apr 9. doi: 10.1016/j.mimet.2016.04.005

PMCID:: PMC6553613

Abstract Article PDF–1003K

Select item 65505397.

Identification and prevalence of in vivo-induced genes in enterohaemorrhagic Escherichia coli

Marion Gardette, Simon Le Hello, Patricia Mariani-Kurkdjian, Laetitia Fabre, François Gravey, Annie Garrivier, Estelle Loukiadis, Grégory Jubelin

Virulence. 2019; 10(1): 180–193. Published online 2019 Mar 16. doi: 10.1080/21505594.2019.1582976

PMCID:: PMC6550539

Abstract Article PDF–3.0M

Select item 65460828.

ConFindr: rapid detection of intraspecies and cross-species contamination in bacterial whole-genome sequence data

Andrew J. Low, Adam G. Koziol, Paul A. Manninger, Burton Blais, Catherine D. Carrillo

PeerJ. 2019; 7: e6995. Published online 2019 May 31. doi: 10.7717/peerj.6995

PMCID:: PMC6546082

Abstract Article PDF–244K

Select item 65320469.

Influence of Plant Species, Tissue Type, and Temperature on the Capacity of Shiga-Toxigenic Escherichia coli To Colonize, Grow, and Be Internalized by Plants

Bernhard Merget, Ken J. Forbes, Fiona Brennan, Sean McAteer, Tom Shepherd, Norval J. C. Strachan, Nicola J. Holden

Appl Environ Microbiol. 2019 Jun 1; 85(11): e00123-19. Prepublished online 2019 Mar 22. Published online 2019 May 16. doi: 10.1128/AEM.00123-19

PMCID:: PMC6532046

Abstract Article PDF–1.3M

Select item 641436610.

Rapid and Simple Universal Escherichia coli Genotyping Method Based on Multiple-Locus Variable-Number Tandem-Repeat Analysis Using Single-Tube Multiplex PCR and Standard Gel Electrophoresis

François Caméléna, André Birgy, Yasmine Smail, Céline Courroux, Patricia Mariani-Kurkdjian, Simon Le Hello, Stéphane Bonacorsi, Philippe Bidet

Appl Environ Microbiol. 2019 Mar 15; 85(6): e02812-18. Prepublished online 2019 Jan 4. Published online 2019 Mar 6. doi: 10.1128/AEM.02812-18

PMCID:: PMC6414366

Abstract Article PDF–1.9M

Select item 637969811.

Whole genome sequencing based typing and characterisation of Shiga-toxin producing Escherichia coli strains belonging to O157 and O26 serotypes and isolated in dairy farms

Frederique Pasquali, Federica Palma, Marcello Trevisani, Antonio Parisi, Alex Lucchi, Alessandra De Cesare, Gerardo Manfreda

Ital J Food Saf. 2018 Dec 31; 7(4): 7673. Published online 2019 Feb 8. doi: 10.4081/ijfs.2018.7673

PMCID:: PMC6379698

Abstract Article PDF–754K

Select item 635480612.

sRNA Target Prediction Organizing Tool (SPOT) Integrates Computational and Experimental Data To Facilitate Functional Characterization of Bacterial Small RNAs

Alisa M. King, Carin K. Vanderpool, Patrick H. Degnan

mSphere. 2019 Jan-Feb; 4(1): e00561-18. Published online 2019 Jan 30. doi: 10.1128/mSphere.00561-18

PMCID:: PMC6354806

Abstract Article PDF–543K

Select item 627808413.

Evaluation of whole-genome sequencing for outbreak detection of Verotoxigenic Escherichia coli O157:H7 from the Canadian perspective

Jillian Rumore, Lorelee Tschetter, Ashley Kearney, Rima Kandar, Rachel McCormick, Matthew Walker, Christy-Lynn Peterson, Aleisha Reimer, Celine Nadon

BMC Genomics. 2018; 19: 870. Published online 2018 Dec 4. doi: 10.1186/s12864-018-5243-3

PMCID:: PMC6278084

Abstract Article PDF–1.0M

Select item 626790714.

High frequency of hybrid Escherichia coli strains with combined Intestinal Pathogenic Escherichia coli (IPEC) and Extraintestinal Pathogenic Escherichia coli (ExPEC) virulence factors isolated from human faecal samples

Bjørn-Arne Lindstedt, Misti D. Finton, Davide Porcellato, Lin T. Brandal

BMC Infect Dis. 2018; 18: 544. Published online 2018 Nov 1. doi: 10.1186/s12879-018-3449-2

PMCID:: PMC6267907

Abstract Article PDF–635K

Select item 621010515.

Stress Resistance Development and Genome-Wide Transcriptional Response of Escherichia coli O157:H7 Adapted to Sublethal Thymol, Carvacrol, and trans-Cinnamaldehyde

Wenqian Yuan, Zi Jing Seng, Gurjeet Singh Kohli, Liang Yang, Hyun-Gyun Yuk

Appl Environ Microbiol. 2018 Nov 15; 84(22): e01616-18. Prepublished online 2018 Sep 14. Published online 2018 Oct 30. doi: 10.1128/AEM.01616-18

PMCID:: PMC6210105

Abstract Article PDF–746K

Select item 611925016.

Attack of the clones: whole genome-based characterization of two closely related enterohemorrhagic Escherichia coli O26 epidemic lineages

Lucia Karnisova, Monika Marejkova, Hana Hrbackova, Alexander Mellmann, Helge Karch, Angelika Fruth, Pavel Drevinek, Kveta Blahova, Martina Bielaszewska, Jaroslav Nunvar

BMC Genomics. 2018; 19: 647. Published online 2018 Aug 31. doi: 10.1186/s12864-018-5045-7

PMCID:: PMC6119250

Abstract Article PDF–1.0M

Select item 604057717.

Protein Sequences Recapitulate Genetic Code Evolution

Hervé Seligmann

Comput Struct Biotechnol J. 2018; 16: 177–189. Published online 2018 May 30. doi: 10.1016/j.csbj.2018.05.001

PMCID:: PMC6040577

Abstract Article PDF–710K

Select item 602852418.

Identification of Novel Biomarkers for Priority Serotypes of Shiga Toxin-Producing Escherichia coli and the Development of Multiplex PCR for Their Detection

Matthias Kiel, Pierre Sagory-Zalkind, Céline Miganeh, Christoph Stork, Andreas Leimbach, Camilla Sekse, Alexander Mellmann, François Rechenmann, Ulrich Dobrindt

Front Microbiol. 2018; 9: 1321. Published online 2018 Jun 26. doi: 10.3389/fmicb.2018.01321