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Select item 70583541.

A 100 bp GAGA motif-containing sequence in AGAMOUS second intron is able to suppress the activity of CaMV35S enhancer in vegetative tissues

Ruochen Liu, Xiuping Zou, You Wang, Qin Long, Yan Pei

PLoS One. 2020; 15(3): e0230203. Published online 2020 Mar 5. doi: 10.1371/journal.pone.0230203

PMCID:: PMC7058354

Abstract Article PDF–2.6M

Select item 70400632.

A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana

Neerakkal Sujeeth, Nikolay Mehterov, Saurabh Gupta, Muhammad K. Qureshi, Axel Fischer, Sebastian Proost, M. Amin Omidbakhshfard, Toshihiro Obata, Maria Benina, Nikola Staykov, Salma Balazadeh, Dirk Walther, Alisdair R. Fernie, Bernd Mueller-Roeber, Jacques Hille, Tsanko S. Gechev

Cell Mol Life Sci. 2020 Feb; 77(4): 705–718. Published online 2019 Jun 27. doi: 10.1007/s00018-019-03202-5

PMCID:: PMC7040063

Abstract Article PDF–1.6M

Select item 69977103.

Two SnRK2-Interacting Calcium Sensor Isoforms Negatively Regulate SnRK2 Activity by Different Mechanisms

Krzysztof Tarnowski, Maria Klimecka, Arkadiusz Ciesielski, Grażyna Goch, Anna Kulik, Halina Fedak, Jarosław Poznański, Małgorzata Lichocka, Marcin Pierechod, Richard A. Engh, Michał Dadlez, Grażyna Dobrowolska, Maria Bucholc

Plant Physiol. 2020 Feb; 182(2): 1142–1160. Published online 2019 Nov 7. doi: 10.1104/pp.19.00900

PMCID:: PMC6997710

Abstract Article PDF–2.3M

Select item 64169244.

GRIBCG: a software for selection of sgRNAs in the design of balancer chromosomes

Brian B. Merritt, Lily S. Cheung

BMC Bioinformatics. 2019; 20: 122. Published online 2019 Mar 12. doi: 10.1186/s12859-019-2712-x

PMCID:: PMC6416924

Abstract Article PDF–1.4M

Select item 62156125.

Mosaic mitochondrial-plastid insertions into the nuclear genome show evidence of both non-homologous end joining and homologous recombination

Shir Portugez, William F. Martin, Einat Hazkani-Covo

BMC Evol Biol. 2018; 18: 162. Published online 2018 Nov 3. doi: 10.1186/s12862-018-1279-x

PMCID:: PMC6215612

Abstract Article PDF–900K

Select item 60436186.

Characterization of a ripening-related transcription factor FcNAC1 from Fragaria chiloensis fruit

C. Carrasco-Orellana, Y. Stappung, A. Mendez-Yañez, A. C. Allan, R. V. Espley, B. J. Plunkett, M. A. Moya-Leon, R. Herrera

Sci Rep. 2018; 8: 10524. Published online 2018 Jul 12. doi: 10.1038/s41598-018-28226-y

PMCID:: PMC6043618

Abstract Article PDF–1.9M

Select item 58364507.

Three endoplasmic reticulum-associated fatty acyl-coenzyme a reductases were involved in the production of primary alcohols in hexaploid wheat (Triticum aestivum L.)

Guaiqiang Chai, Chunlian Li, Feng Xu, Yang Li, Xue Shi, Yong Wang, Zhonghua Wang

BMC Plant Biol. 2018; 18: 41. Published online 2018 Mar 5. doi: 10.1186/s12870-018-1256-y

PMCID:: PMC5836450

Abstract Article PDF–5.3M

Select item 56326648.

Global Analysis of Small RNA Dynamics during Seed Development of Picea glauca and Arabidopsis thaliana Populations Reveals Insights on their Evolutionary Trajectories

Yang Liu, Yousry A. El-Kassaby

Front Plant Sci. 2017; 8: 1719. Published online 2017 Oct 4. doi: 10.3389/fpls.2017.01719

PMCID:: PMC5632664

Abstract Article PDF–6.5M

Select item 55024609.

Interplay of Plasma Membrane and Vacuolar Ion Channels, Together with BAK1, Elicits Rapid Cytosolic Calcium Elevations in Arabidopsis during Aphid Feeding

Thomas R. Vincent, Marieta Avramova, James Canham, Peter Higgins, Natasha Bilkey, Sam T. Mugford, Marco Pitino, Masatsugu Toyota, Simon Gilroy, Anthony J. Miller, Saskia A. Hogenhout, Dale Sanders

Plant Cell. 2017 Jun; 29(6): 1460–1479. Published online 2017 May 30. doi: 10.1105/tpc.17.00136

PMCID:: PMC5502460

Abstract Article PDF–3.6M

Select item 533354410.

Purification and biochemical characterization of recombinant Persicaria minor β-sesquiphellandrene synthase

De-Sheng Ker, Sze Lei Pang, Noor Farhan Othman, Sekar Kumaran, Ee Fun Tan, Thiba Krishnan, Kok Gan Chan, Roohaida Othman, Maizom Hassan, Chyan Leong Ng

PeerJ. 2017; 5: e2961. Published online 2017 Feb 28. doi: 10.7717/peerj.2961

PMCID:: PMC5333544

Abstract Article PDF–6.2M

Select item 521325711.

Ecological genomics of local adaptation in Cornus florida L. by genotyping by sequencing

Andrew L. Pais, Ross W. Whetten, Qiu‐Yun (Jenny) Xiang

Ecol Evol. 2017 Jan; 7(1): 441–465. Published online 2016 Dec 20. doi: 10.1002/ece3.2623

PMCID:: PMC5213257

Abstract Article PDF–1.5M

Select item 501390712.

SA-SSR: a suffix array-based algorithm for exhaustive and efficient SSR discovery in large genetic sequences

B. D. Pickett, S. M. Karlinsey, C. E. Penrod, M. J. Cormier, M. T. W. Ebbert, D. K. Shiozawa, C. J. Whipple, P. G. Ridge

Bioinformatics. 2016 Sep 1; 32(17): 2707–2709. Published online 2016 May 11. doi: 10.1093/bioinformatics/btw298

PMCID:: PMC5013907

Abstract Article PDF–92K

Select item 481472013.

Agronomic and Seed Quality Traits Dissected by Genome-Wide Association Mapping in Brassica napus

Niklas Körber, Anja Bus, Jinquan Li, Isobel A. P. Parkin, Benjamin Wittkop, Rod J. Snowdon, Benjamin Stich

Front Plant Sci. 2016; 7: 386. Published online 2016 Mar 31. doi: 10.3389/fpls.2016.00386

PMCID:: PMC4814720

Abstract Article PDF–3.1M

Select item 474668314.

Epigenetic Regulation of Vegetative Phase Change in Arabidopsis

Mingli Xu, Tieqiang Hu, Michael R. Smith, R. Scott Poethig

Plant Cell. 2016 Jan; 28(1): 28–41. Published online 2015 Dec 24. doi: 10.1105/tpc.15.00854

PMCID:: PMC4746683

Abstract Article PDF–1.2M

Select item 464285115.

Embryo-lethal phenotypes in early abp1 mutants are due to disruption of the neighboring BSM gene

Jaroslav Michalko, Marta Dravecká, Tobias Bollenbach, Jiří Friml

Version 1. F1000Res. 2015; 4: 1104. Published online 2015 Oct 23. doi: 10.12688/f1000research.7143.1

PMCID:: PMC4642851

Abstract Article PDF–4.2M

Select item 460703616.

Global Chromatin State Analysis Reveals Lineage-Specific Enhancers During the Initiation of Human T helper-1 and T helper-2 Cell Polarisation

R. David Hawkins, Antti Larjo, Subhash K. Tripathi, Ulrich Wagner, Ying Luu, Tapio Lönnberg, Sunil K. Raghav, Leonard K. Lee, Riikka Lund, Harri Lähdesmäki, Bing Ren, Riitta Lahesmaa

Immunity. Author manuscript; available in PMC 2015 Oct 15.

Published in final edited form as: Immunity. 2013 Jun 27; 38(6): 1271–1284. Published online 2013 Jun 20. doi: 10.1016/j.immuni.2013.05.011

PMCID:: PMC4607036

Abstract Article PDF–796K

Select item 456211917.

Comparative analyses of CTCF and BORIS occupancies uncover two distinct classes of CTCF binding genomic regions

Elena M. Pugacheva, Samuel Rivero-Hinojosa, Celso A. Espinoza, Claudia Fabiola Méndez-Catalá, Sungyun Kang, Teruhiko Suzuki, Natsuki Kosaka-Suzuki, Susan Robinson, Vijayaraj Nagarajan, Zhen Ye, Abdelhalim Boukaba, John E. J. Rasko, Alexander V. Strunnikov, Dmitri Loukinov, Bing Ren, Victor V. Lobanenkov

Genome Biol. 2015; 16(1): 161. Published online 2015 Aug 14. doi: 10.1186/s13059-015-0736-8

PMCID:: PMC4562119

Abstract Article PDF–4.4M

Select item 452691918.

The IDA/IDA-LIKE and PIP/PIP-LIKE gene families in Arabidopsis: phylogenetic relationship, expression patterns, and transcriptional effect of the PIPL3 peptide

Ane Kjersti Vie, Javad Najafi, Bin Liu, Per Winge, Melinka A. Butenko, Karina S. Hornslien, Robert Kumpf, Reidunn B. Aalen, Atle M. Bones, Tore Brembu

J Exp Bot. 2015 Aug; 66(17): 5351–5365. Published online 2015 Jun 10. doi: 10.1093/jxb/erv285

PMCID:: PMC4526919

Abstract Article PDF–7.1M

Select item 452570619.

DNA methylation data analysis and its application to cancer research

Xiaotu Ma, Yi-Wei Wang, Michael Q Zhang, Adi F Gazdar

Epigenomics. Author manuscript; available in PMC 2015 Aug 5.

Published in final edited form as: Epigenomics. 2013 Jun; 5(3): 301–316. doi: 10.2217/epi.13.26

PMCID:: PMC4525706

Abstract Article PDF–2.8M

Select item 449902120.

Human Body Epigenome Maps Reveal Noncanonical DNA Methylation Variation

Matthew D. Schultz, Yupeng He, John W. Whitaker, Manoj Hariharan, Eran A. Mukamel, Danny Leung, Nisha Rajagopal, Joseph R. Nery, Mark A. Urich, Huaming Chen, Shin Lin, Yiing Lin, Inkyung Jung, Anthony D. Schmitt, Siddarth Selvaraj, Bing Ren, Terrence J. Sejnowski, Wei Wang, Joseph R. Ecker

Nature. Author manuscript; available in PMC 2016 Jan 9.

Published in final edited form as: Nature. 2015 Jul 9; 523(7559): 212–216. Published online 2015 Jun 1. doi: 10.1038/nature14465

Correction in:: Nature. 2016 Feb 11; 530(7589): 242.

PMCID:: PMC4499021

Abstract Article PDF–2.9M

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