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Items: 1 to 20 of 75

1.
A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana
Neerakkal Sujeeth, Nikolay Mehterov, Saurabh Gupta, Muhammad K. Qureshi, Axel Fischer, Sebastian Proost, M. Amin Omidbakhshfard, Toshihiro Obata, Maria Benina, Nikola Staykov, Salma Balazadeh, Dirk Walther, Alisdair R. Fernie, Bernd Mueller-Roeber, Jacques Hille, Tsanko S. Gechev
Cell Mol Life Sci. 2020 Feb; 77(4): 705–718. Published online 2019 Jun 27. doi: 10.1007/s00018-019-03202-5
PMCID:
PMC7040063
ArticlePDF–1.6M
2.
A T-DNA mutant screen that combines high-throughput phenotyping with the efficient identification of mutated genes by targeted genome sequencing
Ulrike Frank, Susanne Kublik, Dörte Mayer, Marion Engel, Michael Schloter, Jörg Durner, Frank Gaupels
BMC Plant Biol. 2019; 19: 539. Published online 2019 Dec 4. doi: 10.1186/s12870-019-2162-7
PMCID:
PMC6894221
ArticlePDF–2.1M
3.
Detection and identification of transgenic events by next generation sequencing combined with enrichment technologies
Frédéric Debode, Julie Hulin, Benoît Charloteaux, Wouter Coppieters, Marc Hanikenne, Latifa Karim, Gilbert Berben
Sci Rep. 2019; 9: 15595. Published online 2019 Oct 30. doi: 10.1038/s41598-019-51668-x
PMCID:
PMC6821802
ArticlePDF–1.3M
4.
Targeted deletion of floral development genes in Arabidopsis with CRISPR/Cas9 using the RNA endoribonuclease Csy4 processing system
Yingzhu Liu, Yike Gao, Yaohui Gao, Qixiang Zhang
Hortic Res. 2019; 6: 99. Published online 2019 Aug 21. doi: 10.1038/s41438-019-0179-6
PMCID:
PMC6804923
ArticlePDF–2.7M
5.
Metabolomic assessment of exposure to near-highway ultrafine particles
Douglas I. Walker, Kevin J. Lane, Ken Liu, Karan Uppal, Allison P. Patton, John L. Durant, Dean P. Jones, Doug Brugge, Kurt D. Pennell
J Expo Sci Environ Epidemiol. Author manuscript; available in PMC 2019 Jun 6.
Published in final edited form as: J Expo Sci Environ Epidemiol. 2019 Jun; 29(4): 469–483. Published online 2018 Dec 5. doi: 10.1038/s41370-018-0102-5
PMCID:
PMC6551325
ArticlePDF–689K
6.
GRIBCG: a software for selection of sgRNAs in the design of balancer chromosomes
Brian B. Merritt, Lily S. Cheung
BMC Bioinformatics. 2019; 20: 122. Published online 2019 Mar 12. doi: 10.1186/s12859-019-2712-x
PMCID:
PMC6416924
ArticlePDF–1.4M
7.
Metabolic perturbations in classic galactosemia beyond the Leloir pathway: insights from an untargeted metabolomic study
S. Taylor Fischer, Allison B. Frederick, ViLinh Tran, Shuzhao Li, Dean P. Jones, Judith L. Fridovich-Keil
J Inherit Metab Dis. Author manuscript; available in PMC 2020 Mar 1.
Published in final edited form as: J Inherit Metab Dis. 2019 Mar; 42(2): 254–263. Published online 2019 Jan 22. doi: 10.1002/jimd.12007
PMCID:
PMC6414239
ArticlePDF–655K
8.
Assessing the impact of exact reads on reducing the error rate of read mapping
Farzaneh Salari, Fatemeh Zare-Mirakabad, Mehdi Sadeghi, Hassan Rokni-Zadeh
BMC Bioinformatics. 2018; 19: 406. Published online 2018 Nov 6. doi: 10.1186/s12859-018-2432-7
PMCID:
PMC6220446
ArticlePDF–1.9M
9.
Mosaic mitochondrial-plastid insertions into the nuclear genome show evidence of both non-homologous end joining and homologous recombination
Shir Portugez, William F. Martin, Einat Hazkani-Covo
BMC Evol Biol. 2018; 18: 162. Published online 2018 Nov 3. doi: 10.1186/s12862-018-1279-x
PMCID:
PMC6215612
ArticlePDF–900K
10.
PROTEIN PHOSHATASE 2A B’α and β Maintain Centromeric Sister Chromatid Cohesion during Meiosis in Arabidopsis
Guoliang Yuan, Behzad Heidari Ahootapeh, Shinichiro Komaki, Arp Schnittger, Cathrine Lillo, Nico De Storme, Danny Geelen
Plant Physiol. 2018 Sep; 178(1): 317–328. Published online 2018 Jul 30. doi: 10.1104/pp.18.00281
PMCID:
PMC6130024
ArticlePDF–1.6M
11.
Succinct colored de Bruijn graphs
Martin D. Muggli, Alexander Bowe, Noelle R. Noyes, Paul S. Morley, Keith E. Belk, Robert Raymond, Travis Gagie, Simon J. Puglisi, Christina Boucher
Bioinformatics. 2017 Oct 15; 33(20): 3181–3187. Published online 2017 Feb 14. doi: 10.1093/bioinformatics/btx067
PMCID:
PMC5872255
ArticlePDF–224K
12.
Global Analysis of Small RNA Dynamics during Seed Development of Picea glauca and Arabidopsis thaliana Populations Reveals Insights on their Evolutionary Trajectories
Yang Liu, Yousry A. El-Kassaby
Front Plant Sci. 2017; 8: 1719. Published online 2017 Oct 4. doi: 10.3389/fpls.2017.01719
PMCID:
PMC5632664
ArticlePDF–6.5M
13.
Young inversion with multiple linked QTLs under selection in a hybrid zone
Cheng-Ruei Lee, Baosheng Wang, Julius Mojica, Terezie Mandáková, Kasavajhala V. S. K. Prasad, Jose Luis Goicoechea, Nadeesha Perera, Uffe Hellsten, Hope N. Hundley, Jenifer Johnson, Jane Grimwood, Kerrie Barry, Stephen Fairclough, Jerry W. Jenkins, Yeisoo Yu, Dave Kudrna, Jianwei Zhang, Jayson Talag, Wolfgang Golser, Katherine Ghattas, M. Eric Schranz, Rod Wing, Martin A. Lysak, Jeremy Schmutz, Daniel S. Rokhsar, Thomas Mitchell-Olds
Nat Ecol Evol. Author manuscript; available in PMC 2018 Apr 3.
Published in final edited form as: Nat Ecol Evol. 2017 Apr 3; 1(5): 119. Published online 2017 Apr 3. doi: 10.1038/s41559-017-0119
Correction in:
Nat Ecol Evol. 2017 Oct; 1(10): 1585.
PMCID:
PMC5607633
ArticlePDF–915K
14.
Contrasting Patterns of Nucleotide Substitution Rates Provide Insight into Dynamic Evolution of Plastid and Mitochondrial Genomes of Geranium
Seongjun Park, Tracey A. Ruhlman, Mao-Lun Weng, Nahid H. Hajrah, Jamal S.M. Sabir, Robert K. Jansen
Genome Biol Evol. 2017 Jun; 9(6): 1766–1780. Published online 2017 Jul 6. doi: 10.1093/gbe/evx124
PMCID:
PMC5570028
ArticlePDF–2.3M
15.
Interplay of Plasma Membrane and Vacuolar Ion Channels, Together with BAK1, Elicits Rapid Cytosolic Calcium Elevations in Arabidopsis during Aphid Feeding
Thomas R. Vincent, Marieta Avramova, James Canham, Peter Higgins, Natasha Bilkey, Sam T. Mugford, Marco Pitino, Masatsugu Toyota, Simon Gilroy, Anthony J. Miller, Saskia A. Hogenhout, Dale Sanders
Plant Cell. 2017 Jun; 29(6): 1460–1479. Published online 2017 May 30. doi: 10.1105/tpc.17.00136
PMCID:
PMC5502460
ArticlePDF–3.6M
16.
Redox dynamics of manganese as a mitochondrial life-death switch
Matthew Ryan Smith, Jolyn Fernandes, Young-Mi Go, Dean P. Jones
Biochem Biophys Res Commun. Author manuscript; available in PMC 2017 Apr 6.
Published in final edited form as: Biochem Biophys Res Commun. 2017 Jan 15; 482(3): 388–398. Published online 2017 Feb 3. doi: 10.1016/j.bbrc.2016.10.126
PMCID:
PMC5382988
ArticlePDF–1.1M
17.
Computational Metabolomics: A Framework for the Million Metabolome
Karan Uppal, Douglas I. Walker, Ken Liu, Shuzhao Li, Young-Mi Go, Dean P. Jones
Chem Res Toxicol. Author manuscript; available in PMC 2017 Mar 31.
Published in final edited form as: Chem Res Toxicol. 2016 Dec 19; 29(12): 1956–1975. Published online 2016 Oct 12. doi: 10.1021/acs.chemrestox.6b00179
PMCID:
PMC5376098
ArticlePDF–969K
18.
Analysis of carotenogenic genes promoters and WRKY transcription factors in response to salt stress in Dunaliella bardawil
Ming-Hua Liang, Jian-Guo Jiang
Sci Rep. 2017; 7: 37025. Published online 2017 Jan 27. doi: 10.1038/srep37025
PMCID:
PMC5269594
ArticlePDF–838K
19.
Inhibition of Ileal Bile Acid Uptake Protects Against Non-alcoholic Fatty Liver Disease in High Fat Diet-fed Mice
Anuradha Rao, Astrid Kosters, Jamie E. Mells, Wujuan Zhang, Kenneth D. R. Setchell, Angelica M. Amanso, Grace M. Wynn, Tianlei Xu, Brad T. Keller, Hong Yin, Sophia Banton, Dean P. Jones, Hao Wu, Paul A. Dawson, Saul J. Karpen
Sci Transl Med. Author manuscript; available in PMC 2017 Mar 21.
Published in final edited form as: Sci Transl Med. 2016 Sep 21; 8(357): 357ra122. doi: 10.1126/scitranslmed.aaf4823
PMCID:
PMC5056562
ArticlePDF–4.7M
20.
Jabba: hybrid error correction for long sequencing reads
Giles Miclotte, Mahdi Heydari, Piet Demeester, Stephane Rombauts, Yves Van de Peer, Pieter Audenaert, Jan Fostier
Algorithms Mol Biol. 2016; 11: 10. Published online 2016 May 3. doi: 10.1186/s13015-016-0075-7
PMCID:
PMC4855726
ArticlePDF–1.8M

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