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Select item 70400631.

A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana

Neerakkal Sujeeth, Nikolay Mehterov, Saurabh Gupta, Muhammad K. Qureshi, Axel Fischer, Sebastian Proost, M. Amin Omidbakhshfard, Toshihiro Obata, Maria Benina, Nikola Staykov, Salma Balazadeh, Dirk Walther, Alisdair R. Fernie, Bernd Mueller-Roeber, Jacques Hille, Tsanko S. Gechev

Cell Mol Life Sci. 2020 Feb; 77(4): 705–718. Published online 2019 Jun 27. doi: 10.1007/s00018-019-03202-5

PMCID:: PMC7040063

Abstract Article PDF–1.6M

Select item 68942212.

A T-DNA mutant screen that combines high-throughput phenotyping with the efficient identification of mutated genes by targeted genome sequencing

Ulrike Frank, Susanne Kublik, Dörte Mayer, Marion Engel, Michael Schloter, Jörg Durner, Frank Gaupels

BMC Plant Biol. 2019; 19: 539. Published online 2019 Dec 4. doi: 10.1186/s12870-019-2162-7

PMCID:: PMC6894221

Abstract Article PDF–2.1M

Select item 68218023.

Detection and identification of transgenic events by next generation sequencing combined with enrichment technologies

Frédéric Debode, Julie Hulin, Benoît Charloteaux, Wouter Coppieters, Marc Hanikenne, Latifa Karim, Gilbert Berben

Sci Rep. 2019; 9: 15595. Published online 2019 Oct 30. doi: 10.1038/s41598-019-51668-x

PMCID:: PMC6821802

Abstract Article PDF–1.3M

Select item 68049234.

Targeted deletion of floral development genes in Arabidopsis with CRISPR/Cas9 using the RNA endoribonuclease Csy4 processing system

Yingzhu Liu, Yike Gao, Yaohui Gao, Qixiang Zhang

Hortic Res. 2019; 6: 99. Published online 2019 Aug 21. doi: 10.1038/s41438-019-0179-6

PMCID:: PMC6804923

Abstract Article PDF–2.7M

Select item 64169245.

GRIBCG: a software for selection of sgRNAs in the design of balancer chromosomes

Brian B. Merritt, Lily S. Cheung

BMC Bioinformatics. 2019; 20: 122. Published online 2019 Mar 12. doi: 10.1186/s12859-019-2712-x

PMCID:: PMC6416924

Abstract Article PDF–1.4M

Select item 63387566.

DNA methylation in mice is influenced by genetics as well as sex and life experience

Sara A. Grimm, Takashi Shimbo, Motoki Takaku, James W. Thomas, Scott Auerbach, Brian D. Bennett, John R. Bucher, Adam B. Burkholder, Frank Day, Ying Du, Christopher G. Duncan, John E. French, Julie F. Foley, Jianying Li, B. Alex Merrick, Raymond R. Tice, Tianyuan Wang, Xiaojiang Xu, NISC Comparative Sequencing Program, Pierre R. Bushel, David C. Fargo, James C. Mullikin, Paul A. Wade

Nat Commun. 2019; 10: 305. Published online 2019 Jan 18. doi: 10.1038/s41467-018-08067-z

PMCID:: PMC6338756

Abstract Article PDF–3.4M

Select item 62204467.

Assessing the impact of exact reads on reducing the error rate of read mapping

Farzaneh Salari, Fatemeh Zare-Mirakabad, Mehdi Sadeghi, Hassan Rokni-Zadeh

BMC Bioinformatics. 2018; 19: 406. Published online 2018 Nov 6. doi: 10.1186/s12859-018-2432-7

PMCID:: PMC6220446

Abstract Article PDF–1.9M

Select item 62156128.

Mosaic mitochondrial-plastid insertions into the nuclear genome show evidence of both non-homologous end joining and homologous recombination

Shir Portugez, William F. Martin, Einat Hazkani-Covo

BMC Evol Biol. 2018; 18: 162. Published online 2018 Nov 3. doi: 10.1186/s12862-018-1279-x

PMCID:: PMC6215612

Abstract Article PDF–900K

Select item 61300249.

PROTEIN PHOSHATASE 2A B’α and β Maintain Centromeric Sister Chromatid Cohesion during Meiosis in Arabidopsis

Guoliang Yuan, Behzad Heidari Ahootapeh, Shinichiro Komaki, Arp Schnittger, Cathrine Lillo, Nico De Storme, Danny Geelen

Plant Physiol. 2018 Sep; 178(1): 317–328. Published online 2018 Jul 30. doi: 10.1104/pp.18.00281

PMCID:: PMC6130024

Abstract Article PDF–1.6M

Select item 603167510.

Dosage compensation and DNA methylation landscape of the X chromosome in mouse liver

Christopher G. Duncan, Sara A. Grimm, Daniel L. Morgan, Pierre R. Bushel, Brian D. Bennett, NISC Comparative Sequencing Program, John D. Roberts, Frederick L. Tyson, B. Alex Merrick, Paul A. Wade

Sci Rep. 2018; 8: 10138. Published online 2018 Jul 4. doi: 10.1038/s41598-018-28356-3

PMCID:: PMC6031675

Abstract Article PDF–5.3M

Select item 587225511.

Succinct colored de Bruijn graphs

Martin D. Muggli, Alexander Bowe, Noelle R. Noyes, Paul S. Morley, Keith E. Belk, Robert Raymond, Travis Gagie, Simon J. Puglisi, Christina Boucher

Bioinformatics. 2017 Oct 15; 33(20): 3181–3187. Published online 2017 Feb 14. doi: 10.1093/bioinformatics/btx067

PMCID:: PMC5872255

Abstract Article PDF–224K

Select item 584430212.

Base-Resolution Analysis of DNA Methylation Patterns Downstream of Dnmt3a in Mouse Naïve B Cells

Christopher G. Duncan, Hrisavgi D. Kondilis-Mangum, Sara A. Grimm, Pierre R. Bushel, Kaliopi Chrysovergis, John D. Roberts, Frederick L. Tyson, B. Alex Merrick, Paul A. Wade

G3 (Bethesda) 2018 Mar; 8(3): 805–813. Published online 2018 Jan 11. doi: 10.1534/g3.117.300446

PMCID:: PMC5844302

Abstract Article PDF–1.2M

Select item 563266413.

Global Analysis of Small RNA Dynamics during Seed Development of Picea glauca and Arabidopsis thaliana Populations Reveals Insights on their Evolutionary Trajectories

Yang Liu, Yousry A. El-Kassaby

Front Plant Sci. 2017; 8: 1719. Published online 2017 Oct 4. doi: 10.3389/fpls.2017.01719

PMCID:: PMC5632664

Abstract Article PDF–6.5M

Select item 557002814.

Contrasting Patterns of Nucleotide Substitution Rates Provide Insight into Dynamic Evolution of Plastid and Mitochondrial Genomes of Geranium

Seongjun Park, Tracey A. Ruhlman, Mao-Lun Weng, Nahid H. Hajrah, Jamal S.M. Sabir, Robert K. Jansen

Genome Biol Evol. 2017 Jun; 9(6): 1766–1780. Published online 2017 Jul 6. doi: 10.1093/gbe/evx124

PMCID:: PMC5570028

Abstract Article PDF–2.3M

Select item 550246015.

Interplay of Plasma Membrane and Vacuolar Ion Channels, Together with BAK1, Elicits Rapid Cytosolic Calcium Elevations in Arabidopsis during Aphid Feeding

Thomas R. Vincent, Marieta Avramova, James Canham, Peter Higgins, Natasha Bilkey, Sam T. Mugford, Marco Pitino, Masatsugu Toyota, Simon Gilroy, Anthony J. Miller, Saskia A. Hogenhout, Dale Sanders

Plant Cell. 2017 Jun; 29(6): 1460–1479. Published online 2017 May 30. doi: 10.1105/tpc.17.00136