Full text in PMC (nucleotide) for Gene (Select 851210) - PMC

Douglas A. Higgins, Megan K. M. Young, Mary Tremaine, Maria Sardi, Jenna M. Fletcher, Margaret Agnew, Lisa Liu, Quinn Dickinson, David Peris, Russell L. Wrobel, Chris Todd Hittinger, Audrey P. Gasch, Steven W. Singer, Blake A. Simmons, Robert Landick, Michael P. Thelen, Trey K. Sato

Genetics. 2018 Sep; 210(1): 219–234. Published online 2018 Jul 25. doi: 10.1534/genetics.118.301161

PMCID:: PMC6116967

Abstract Article PDF–2.0M

Select item 58493405.

Genome-wide association across Saccharomyces cerevisiae strains reveals substantial variation in underlying gene requirements for toxin tolerance

Maria Sardi, Vaishnavi Paithane, Michael Place, De Elegant Robinson, James Hose, Dana J. Wohlbach, Audrey P. Gasch

PLoS Genet. 2018 Feb; 14(2): e1007217. Published online 2018 Feb 23. doi: 10.1371/journal.pgen.1007217

PMCID:: PMC5849340

Abstract Article PDF–3.6M

Select item 58149686.

The effects of transcription and recombination on mutational dynamics of short tandem repeats

Monika Zavodna, Andrew Bagshaw, Rudiger Brauning, Neil J Gemmell

Nucleic Acids Res. 2018 Feb 16; 46(3): 1321–1330. Published online 2017 Dec 29. doi: 10.1093/nar/gkx1253

PMCID:: PMC5814968

Abstract Article PDF–1.2M

Select item 57373247.

Integrated analysis of individual codon contribution to protein biosynthesis reveals a new approach to improving the basis of rational gene design

Juan C. Villada, Otávio José Bernardes Brustolini, Wendel Batista da Silveira

DNA Res. 2017 Aug; 24(4): 419–434. Published online 2017 Apr 24. doi: 10.1093/dnares/dsx014

PMCID:: PMC5737324

Abstract Article PDF–2.3M

Select item 57358798.

HISEA: HIerarchical SEed Aligner for PacBio data

Nilesh Khiste, Lucian Ilie

BMC Bioinformatics. 2017; 18: 564. Published online 2017 Dec 19. doi: 10.1186/s12859-017-1953-9

PMCID:: PMC5735879

Abstract Article PDF–1.2M

Select item 50651439.

Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae

Trey K. Sato, Mary Tremaine, Lucas S. Parreiras, Alexander S. Hebert, Kevin S. Myers, Alan J. Higbee, Maria Sardi, Sean J. McIlwain, Irene M. Ong, Rebecca J. Breuer, Ragothaman Avanasi Narasimhan, Mick A. McGee, Quinn Dickinson, Alex La Reau, Dan Xie, Mingyuan Tian, Jennifer L. Reed, Yaoping Zhang, Joshua J. Coon, Chris Todd Hittinger, Audrey P. Gasch, Robert Landick

PLoS Genet. 2016 Oct; 12(10): e1006372. Published online 2016 Oct 14. doi: 10.1371/journal.pgen.1006372

Correction in:: PLoS Genet. 2016 Nov; 12(11): e1006447.

PMCID:: PMC5065143

Abstract Article PDF–3.5M

Select item 506338210.

Scarless Gene Tagging with One-Step Transformation and Two-Step Selection in Saccharomyces cerevisiae and Schizosaccharomyces pombe

Dirk Landgraf, Dann Huh, Erinc Hallacli, Susan Lindquist

PLoS One. 2016; 11(10): e0163950. Published online 2016 Oct 13. doi: 10.1371/journal.pone.0163950

PMCID:: PMC5063382

Abstract Article PDF–4.1M

Select item 503803511.

Leveraging Genetic-Background Effects in Saccharomyces cerevisiae To Improve Lignocellulosic Hydrolysate Tolerance

Maria Sardi, Nikolay Rovinskiy, Yaoping Zhang, Audrey P. Gasch

Appl Environ Microbiol. 2016 Oct 1; 82(19): 5838–5849. Prepublished online 2016 Jul 22. Published online 2016 Sep 16. doi: 10.1128/AEM.01603-16

PMCID:: PMC5038035

Abstract Article PDF–818K

Select item 485607312.

Massive Amplification at an Unselected Locus Accompanies Complex Chromosomal Rearrangements in Yeast

Agnès Thierry, Varun Khanna, Bernard Dujon

G3 (Bethesda) 2016 May; 6(5): 1201–1215. Published online 2016 Mar 4. doi: 10.1534/g3.115.024547

PMCID:: PMC4856073

Abstract Article PDF–3.5M

Select item 485572613.

Jabba: hybrid error correction for long sequencing reads

Giles Miclotte, Mahdi Heydari, Piet Demeester, Stephane Rombauts, Yves Van de Peer, Pieter Audenaert, Jan Fostier

Algorithms Mol Biol. 2016; 11: 10. Published online 2016 May 3. doi: 10.1186/s13015-016-0075-7

PMCID:: PMC4855726

Abstract Article PDF–1.8M

Select item 477201414.

Concerted activities of Mcm4, Sld3, and Dbf4 in control of origin activation and DNA replication fork progression

Yi-Jun Sheu, Justin B. Kinney, Bruce Stillman

Genome Res. 2016 Mar; 26(3): 315–330. doi: 10.1101/gr.195248.115

PMCID:: PMC4772014

Abstract Article PDF–2.8M

Select item 472731015.

Extracting DNA words based on the sequence features: non-uniform distribution and integrity

Zhi Li, Hongyan Cao, Yuehua Cui, Yanbo Zhang

Theor Biol Med Model. 2016; 13: 2. Published online 2016 Jan 25. doi: 10.1186/s12976-016-0028-3

PMCID:: PMC4727310

Abstract Article PDF–785K

Select item 446809916.

Discovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary Structures

Yinghan Fu, Zhenjiang Zech Xu, Zhi J. Lu, Shan Zhao, David H. Mathews

PLoS One. 2015; 10(6): e0130200. Published online 2015 Jun 15. doi: 10.1371/journal.pone.0130200

PMCID:: PMC4468099

Abstract Article PDF–3.4M

Select item 435099517.

Setting Up the JBrowse Genome Browser

Mitchell E Skinner, Ian H Holmes

Curr Protoc Bioinformatics. Author manuscript; available in PMC 2015 Mar 5.

Published in final edited form as: Curr Protoc Bioinformatics. 2010 Dec; 0 9: Unit–9.13. doi: 10.1002/0471250953.bi0913s32

PMCID:: PMC4350995

Abstract Article PDF–2.5M

Select item 431749618.

Macrotene chromosomes provide insights to a new mechanism of high-order gene amplification in eukaryotes

Agnès Thierry, Varun Khanna, Sophie Créno, Ingrid Lafontaine, Laurence Ma, Christiane Bouchier, Bernard Dujon

Nat Commun. 2015 Jan 30; 6: 6154. Published online 2015 Jan 30. doi: 10.1038/ncomms7154

PMCID:: PMC4317496

Abstract Article PDF–2.6M

Select item 425003419.

The Accuracy, Feasibility and Challenges of Sequencing Short Tandem Repeats Using Next-Generation Sequencing Platforms

Monika Zavodna, Andrew Bagshaw, Rudiger Brauning, Neil J. Gemmell

PLoS One. 2014; 9(12): e113862. Published online 2014 Dec 1. doi: 10.1371/journal.pone.0113862

PMCID:: PMC4250034

Abstract Article PDF–281K

Select item 399167520.

Highly Specific Contractions of a Single CAG/CTG Trinucleotide Repeat by TALEN in Yeast

Guy-Franck Richard, David Viterbo, Varun Khanna, Valentine Mosbach, Lauriane Castelain, Bernard Dujon

PLoS One. 2014; 9(4): e95611. Published online 2014 Apr 18. doi: 10.1371/journal.pone.0095611

PMCID:: PMC3991675

Abstract Article PDF–1.2M

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