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Select item 63640421.

RGAAT: A Reference-based Genome Assembly and Annotation Tool for New Genomes and Upgrade of Known Genomes

Wanfei Liu, Shuangyang Wu, Qiang Lin, Shenghan Gao, Feng Ding, Xiaowei Zhang, Hasan Awad Aljohi, Jun Yu, Songnian Hu

Genomics Proteomics Bioinformatics. 2018 Oct; 16(5): 373–381. Published online 2018 Dec 21. doi: 10.1016/j.gpb.2018.03.006

PMCID:: PMC6364042

Abstract Article PDF–653K

Select item 61068232.

Astaxanthin overproduction in yeast by strain engineering and new gene target uncovering

Jin Jin, Ying Wang, Mingdong Yao, Xiaoli Gu, Bo Li, Hong Liu, Mingzhu Ding, Wenhai Xiao, Yingjin Yuan

Biotechnol Biofuels. 2018; 11: 230. Published online 2018 Aug 23. doi: 10.1186/s13068-018-1227-4

PMCID:: PMC6106823

Abstract Article PDF–4.4M

Select item 59607173.

Saccharomyces cerevisiae Differential Functionalization of Presumed ScALT1 and ScALT2 Alanine Transaminases Has Been Driven by Diversification of Pyridoxal Phosphate Interactions

Erendira Rojas-Ortega, Beatriz Aguirre-López, Horacio Reyes-Vivas, Martín González-Andrade, Jose C. Campero-Basaldúa, Juan P. Pardo, Alicia González

Front Microbiol. 2018; 9: 944. Published online 2018 May 14. doi: 10.3389/fmicb.2018.00944

PMCID:: PMC5960717

Abstract Article PDF–3.5M

Select item 54293184.

Autolysis of Pichia pastoris induced by cold

Yaneth Bartolo-Aguilar, Luc Dendooven, Cipriano Chávez-Cabrera, Luis B. Flores-Cotera, María E. Hidalgo-Lara, Lourdes Villa-Tanaca, Rodolfo Marsch

AMB Express. 2017; 7: 95. Published online 2017 May 12. doi: 10.1186/s13568-017-0397-y

Correction in:: AMB Express. 2018; 8: 185.

PMCID:: PMC5429318

Abstract Article PDF–1.4M

Select item 50633825.

Scarless Gene Tagging with One-Step Transformation and Two-Step Selection in Saccharomyces cerevisiae and Schizosaccharomyces pombe

Dirk Landgraf, Dann Huh, Erinc Hallacli, Susan Lindquist

PLoS One. 2016; 11(10): e0163950. Published online 2016 Oct 13. doi: 10.1371/journal.pone.0163950

PMCID:: PMC5063382

Abstract Article PDF–4.1M

Select item 49790946.

Protective Effects of Arginine on Saccharomyces cerevisiae Against Ethanol Stress

Yanfei Cheng, Zhaoli Du, Hui Zhu, Xuena Guo, Xiuping He

Sci Rep. 2016; 6: 31311. Published online 2016 Aug 10. doi: 10.1038/srep31311

PMCID:: PMC4979094

Abstract Article PDF–1.3M

Select item 47273107.

Extracting DNA words based on the sequence features: non-uniform distribution and integrity

Zhi Li, Hongyan Cao, Yuehua Cui, Yanbo Zhang

Theor Biol Med Model. 2016; 13: 2. Published online 2016 Jan 25. doi: 10.1186/s12976-016-0028-3

PMCID:: PMC4727310

Abstract Article PDF–785K

Select item 45273628.

An investigation into inter- and intragenomic variations of graphic genomic signatures

Rallis Karamichalis, Lila Kari, Stavros Konstantinidis, Steffen Kopecki

BMC Bioinformatics. 2015; 16: 246. Published online 2015 Aug 7. doi: 10.1186/s12859-015-0655-4

PMCID:: PMC4527362

Abstract Article PDF–2.5M

Select item 44596779.

Light-weight reference-based compression of FASTQ data

Yongpeng Zhang, Linsen Li, Yanli Yang, Xiao Yang, Shan He, Zexuan Zhu

BMC Bioinformatics. 2015; 16(1): 188. Published online 2015 Jun 9. doi: 10.1186/s12859-015-0628-7

PMCID:: PMC4459677

Abstract Article PDF–963K

Select item 422414910.

Nucleosome-Positioning Sequence Repeats Impact Chromatin Silencing in Yeast Minichromosomes

Sangita A. Chakraborty, Abid A. Kazi, Tamreen M. Khan, Sergei A. Grigoryev

Genetics. 2014 Nov; 198(3): 1015–1029. Published online 2014 Sep 3. doi: 10.1534/genetics.114.169508

PMCID:: PMC4224149

Abstract Article PDF–2.9M

Select item 420041111.

Production of salidroside in metabolically engineered Escherichia coli

Yanfen Bai, Huiping Bi, Yibin Zhuang, Chang Liu, Tao Cai, Xiaonan Liu, Xueli Zhang, Tao Liu, Yanhe Ma

Sci Rep. 2014; 4: 6640. Published online 2014 Oct 17. doi: 10.1038/srep06640

PMCID:: PMC4200411

Abstract Article PDF–685K

Select item 396247912.

The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now

Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry

G3 (Bethesda) 2014 Mar; 4(3): 389–398. Published online 2013 Dec 27. doi: 10.1534/g3.113.008995

PMCID:: PMC3962479

Abstract Article PDF–1006K

Select item 334608513.

Structure of a Yeast Dyn2-Nup159 Complex and Molecular Basis for Dynein Light Chain-Nuclear Pore Interaction

Erin M. Romes, Ashutosh Tripathy, Kevin C. Slep

J Biol Chem. 2012 May 4; 287(19): 15862–15873. Published online 2012 Mar 12. doi: 10.1074/jbc.M111.336172

PMCID:: PMC3346085

Abstract Article PDF–4.2M

Select item 324503414.

Saccharomyces Genome Database: the genomics resource of budding yeast

J. Michael Cherry, Eurie L. Hong, Craig Amundsen, Rama Balakrishnan, Gail Binkley, Esther T. Chan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Kalpana Karra, Cynthia J. Krieger, Stuart R. Miyasato, Rob S. Nash, Julie Park, Marek S. Skrzypek, Matt Simison, Shuai Weng, Edith D. Wong

Nucleic Acids Res. 2012 Jan; 40(Database issue): D700–D705. Published online 2011 Nov 21. doi: 10.1093/nar/gkr1029

PMCID:: PMC3245034

Abstract Article PDF–103K

Select item 317497715.

A Single Heterochromatin Boundary Element Imposes Position-Independent Antisilencing Activity in Saccharomyces cerevisiae Minichromosomes

Sangita A. Chakraborty, Robert T. Simpson, Sergei A. Grigoryev

PLoS One. 2011; 6(9): e24835. Published online 2011 Sep 16. doi: 10.1371/journal.pone.0024835

PMCID:: PMC3174977

Abstract Article PDF–1.4M

Select item 304012216.

Saccharomyces cerevisiae S288C genome annotation: a working hypothesis

Dianna G. Fisk, Catherine A. Ball, Kara Dolinski, Stacia R. Engel, Eurie L. Hong, Laurie Issel-Tarver, Katja Schwartz, Anand Sethuraman, David Botstein, J. Michael Cherry, The Saccharomyces Genome Database Project

Yeast. Author manuscript; available in PMC 2011 Feb 16.

Published in final edited form as: Yeast. 2006 Sep; 23(12): 857–865. doi: 10.1002/yea.1400