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Items: 17

Select item 64570101.

Correction to: QTL analysis reveals genomic variants linked to high-temperature fermentation performance in the industrial yeast

Zhen Wang, Qi Qi, Yuping Lin, Yufeng Guo, Yanfang Liu, Qinhong Wang

Biotechnol Biofuels. 2019; 12: 83. Published online 2019 Apr 10. doi: 10.1186/s13068-019-1425-8

Corrects:: Biotechnol Biofuels. 2019; 12: 59.

PMCID:: PMC6457010

Correction PDF–534K

Select item 63017892.

DNA sequence encodes the position of DNA supercoils

Sung Hyun Kim, Mahipal Ganji, Eugene Kim, Jaco van der Torre, Elio Abbondanzieri, Cees Dekker

eLife. 2018; 7: e36557. Published online 2018 Dec 7. doi: 10.7554/eLife.36557

PMCID:: PMC6301789

Abstract Article PDF–7.7M

Select item 58417003.

The sHSP22 Heat Shock Protein Requires the ABI1 Protein Phosphatase to Modulate Polar Auxin Transport and Downstream Responses

Yanli Li, Yaqiong Li, Yongchang Liu, Yaorong Wu, Qi Xie

Plant Physiol. 2018 Mar; 176(3): 2406–2425. Published online 2017 Dec 29. doi: 10.1104/pp.17.01206

PMCID:: PMC5841700

Abstract Article PDF–3.8M

Select item 58346944.

CRISPR/Cas9 cleavages in budding yeast reveal templated insertions and strand-specific insertion/deletion profiles

Brenda R. Lemos, Adam C. Kaplan, Ji Eun Bae, Alexander E. Ferrazzoli, James Kuo, Ranjith P. Anand, David P. Waterman, James E. Haber

Proc Natl Acad Sci U S A. 2018 Feb 27; 115(9): E2040–E2047. Published online 2018 Feb 13. doi: 10.1073/pnas.1716855115

Correction in:: Proc Natl Acad Sci U S A. 2018 Jun 5; 115(23): E5431–E5433.

PMCID:: PMC5834694

Abstract Article PDF–1.6M

Select item 53810495.

Evolutionary gradient of predicted nuclear localization signals (NLS)-bearing proteins in genomes of family Planctomycetaceae

Min Guo, Ruifu Yang, Chen Huang, Qiwen Liao, Guangyi Fan, Chenghang Sun, Simon Ming-Yuen Lee

BMC Microbiol. 2017; 17: 86. Published online 2017 Apr 4. doi: 10.1186/s12866-017-0981-y

PMCID:: PMC5381049

Abstract Article PDF–2.6M

Select item 53617696.

Data on optimization of expression and purification of AIMP2-DX2 protein in Escherichia coli

Roshan Jha, Hye Young Cho, Ameeq Ul Mushtaq, Kiho Lee, Dae Gyu Kim, Sunghoon Kim, Young Ho Jeon

Data Brief. 2017 Apr; 11: 533–536. Published online 2017 Mar 10. doi: 10.1016/j.dib.2017.03.011

PMCID:: PMC5361769

Abstract Article PDF–641K

Select item 50633827.

Scarless Gene Tagging with One-Step Transformation and Two-Step Selection in Saccharomyces cerevisiae and Schizosaccharomyces pombe

Dirk Landgraf, Dann Huh, Erinc Hallacli, Susan Lindquist

PLoS One. 2016; 11(10): e0163950. Published online 2016 Oct 13. doi: 10.1371/journal.pone.0163950

PMCID:: PMC5063382

Abstract Article PDF–4.1M

Select item 47273108.

Extracting DNA words based on the sequence features: non-uniform distribution and integrity

Zhi Li, Hongyan Cao, Yuehua Cui, Yanbo Zhang

Theor Biol Med Model. 2016; 13: 2. Published online 2016 Jan 25. doi: 10.1186/s12976-016-0028-3

PMCID:: PMC4727310

Abstract Article PDF–785K

Select item 47096099.

Long Read Alignment with Parallel MapReduce Cloud Platform

Ahmed Abdulhakim Al-Absi, Dae-Ki Kang

Biomed Res Int. 2015; 2015: 807407. Published online 2015 Dec 29. doi: 10.1155/2015/807407

PMCID:: PMC4709609

Abstract Article PDF–2.4M

Select item 396247910.

The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now

Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry

G3 (Bethesda) 2014 Mar; 4(3): 389–398. Published online 2013 Dec 27. doi: 10.1534/g3.113.008995

PMCID:: PMC3962479

Abstract Article PDF–1006K

Select item 373496411.

Examining new phylogenetic markers to uncover the evolutionary history of early-diverging fungi: comparing MCM7, TSR1 and rRNA genes for single- and multi-gene analyses of the Kickxellomycotina

E.D. Tretter, E.M. Johnson, Y. Wang, P. Kandel, M.M. White

Persoonia. 2013 Jun; 30: 106–125. Published online 2013 Mar 20. doi: 10.3767/003158513X666394

PMCID:: PMC3734964

Abstract Article PDF–786K

Select item 367724312.

Retrotransposon Ty1 RNA contains a 5′-terminal long-range pseudoknot required for efficient reverse transcription

Qing Huang, Katarzyna J. Purzycka, Sabrina Lusvarghi, Donghui Li, Stuart F.J. LeGrice, Jef D. Boeke

RNA. 2013 Mar; 19(3): 320–332. doi: 10.1261/rna.035535.112

PMCID:: PMC3677243

Abstract Article PDF–948K

Select item 324503413.

Saccharomyces Genome Database: the genomics resource of budding yeast

J. Michael Cherry, Eurie L. Hong, Craig Amundsen, Rama Balakrishnan, Gail Binkley, Esther T. Chan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Kalpana Karra, Cynthia J. Krieger, Stuart R. Miyasato, Rob S. Nash, Julie Park, Marek S. Skrzypek, Matt Simison, Shuai Weng, Edith D. Wong

Nucleic Acids Res. 2012 Jan; 40(Database issue): D700–D705. Published online 2011 Nov 21. doi: 10.1093/nar/gkr1029

PMCID:: PMC3245034

Abstract Article PDF–103K

Select item 317497714.

A Single Heterochromatin Boundary Element Imposes Position-Independent Antisilencing Activity in Saccharomyces cerevisiae Minichromosomes

Sangita A. Chakraborty, Robert T. Simpson, Sergei A. Grigoryev

PLoS One. 2011; 6(9): e24835. Published online 2011 Sep 16. doi: 10.1371/journal.pone.0024835

PMCID:: PMC3174977

Abstract Article PDF–1.4M

Select item 304012215.

Saccharomyces cerevisiae S288C genome annotation: a working hypothesis

Dianna G. Fisk, Catherine A. Ball, Kara Dolinski, Stacia R. Engel, Eurie L. Hong, Laurie Issel-Tarver, Katja Schwartz, Anand Sethuraman, David Botstein, J. Michael Cherry, The Saccharomyces Genome Database Project

Yeast. Author manuscript; available in PMC 2011 Feb 16.

Published in final edited form as: Yeast. 2006 Sep; 23(12): 857–865. doi: 10.1002/yea.1400