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Items: 19

1.
Stochastic tuning of gene expression enables cellular adaptation in the absence of pre-existing regulatory circuitry
Peter L Freddolino, Jamie Yang, Amir Momen-Roknabadi, Saeed Tavazoie
eLife. 2018; 7: e31867. Published online 2018 Apr 5. doi: 10.7554/eLife.31867
PMCID:
PMC5919758
AbstractArticlePDF–2.8M
2.
Scarless Gene Tagging with One-Step Transformation and Two-Step Selection in Saccharomyces cerevisiae and Schizosaccharomyces pombe
Dirk Landgraf, Dann Huh, Erinc Hallacli, Susan Lindquist
PLoS One. 2016; 11(10): e0163950. Published online 2016 Oct 13. doi: 10.1371/journal.pone.0163950
PMCID:
PMC5063382
AbstractArticlePDF–4.1M
3.
Extracting DNA words based on the sequence features: non-uniform distribution and integrity
Zhi Li, Hongyan Cao, Yuehua Cui, Yanbo Zhang
Theor Biol Med Model. 2016; 13: 2. Published online 2016 Jan 25. doi: 10.1186/s12976-016-0028-3
PMCID:
PMC4727310
AbstractArticlePDF–785K
4.
In search of coding and non-coding regions of DNA sequences based on balanced estimation of diffusion entropy
Jin Zhang, Wenqing Zhang, Huijie Yang
J Biol Phys. 2016 Jan; 42(1): 99–106. Published online 2015 Aug 29. doi: 10.1007/s10867-015-9399-7
PMCID:
PMC4713410
AbstractArticlePDF–709K
5.
Long Read Alignment with Parallel MapReduce Cloud Platform
Ahmed Abdulhakim Al-Absi, Dae-Ki Kang
Biomed Res Int. 2015; 2015: 807407. Published online 2015 Dec 29. doi: 10.1155/2015/807407
PMCID:
PMC4709609
AbstractArticlePDF–2.4M
6.
Genetic basis of the highly efficient yeast Kluyveromyces marxianus: complete genome sequence and transcriptome analyses
Noppon Lertwattanasakul, Tomoyuki Kosaka, Akira Hosoyama, Yutaka Suzuki, Nadchanok Rodrussamee, Minenosuke Matsutani, Masayuki Murata, Naoko Fujimoto, Suprayogi, Keiko Tsuchikane, Savitree Limtong, Nobuyuki Fujita, Mamoru Yamada
Biotechnol Biofuels. 2015; 8: 47. Published online 2015 Mar 18. doi: 10.1186/s13068-015-0227-x
PMCID:
PMC4381506
AbstractArticlePDF–1.3M
7.
Novel (ovario) leukodystrophy related to AARS2 mutations
Cristina Dallabona, Daria Diodato, Sietske H. Kevelam, Tobias B. Haack, Lee-Jun Wong, Gajja S. Salomons, Enrico Baruffini, Laura Melchionda, Caterina Mariotti, Tim M. Strom, Thomas Meitinger, Holger Prokisch, Kim Chapman, Alison Colley, Helena Rocha, Katrin Őunap, Raphael Schiffmann, Ettore Salsano, Mario Savoiardo, Eline M. Hamilton, Truus E. M. Abbink, Nicole I. Wolf, Ileana Ferrero, Costanza Lamperti, Massimo Zeviani, Adeline Vanderver, Daniele Ghezzi, Marjo S. van der Knaap
Neurology. 2014 Jun 10; 82(23): 2063–2071. doi: 10.1212/WNL.0000000000000497
PMCID:
PMC4118500
AbstractArticlePDF–990K
8.
The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
G3 (Bethesda) 2014 Mar; 4(3): 389–398. Published online 2013 Dec 27. doi: 10.1534/g3.113.008995
PMCID:
PMC3962479
AbstractArticlePDF–1006K
9.
A Convolutional Code-Based Sequence Analysis Model and Its Application
Xiao Liu, Xiaoli Geng
Int J Mol Sci. 2013 Apr; 14(4): 8393–8405. Published online 2013 Apr 16. doi: 10.3390/ijms14048393
PMCID:
PMC3645750
AbstractArticlePDF–517K
10.
Enhanced Transformation of TNT by Arabidopsis Plants Expressing an Old Yellow Enzyme
Bo Zhu, Ri-He Peng, Xiao-Yan Fu, Xiao-Fen Jin, Wei Zhao, Jing Xu, Hong-Juan Han, Jian-Jie Gao, Zhi-Sheng Xu, Lin Bian, Quan-Hong Yao
PLoS One. 2012; 7(7): e39861. Published online 2012 Jul 11. doi: 10.1371/journal.pone.0039861
PMCID:
PMC3394746
AbstractArticlePDF–442K
11.
Saccharomyces Genome Database: the genomics resource of budding yeast
J. Michael Cherry, Eurie L. Hong, Craig Amundsen, Rama Balakrishnan, Gail Binkley, Esther T. Chan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Kalpana Karra, Cynthia J. Krieger, Stuart R. Miyasato, Rob S. Nash, Julie Park, Marek S. Skrzypek, Matt Simison, Shuai Weng, Edith D. Wong
Nucleic Acids Res. 2012 Jan; 40(Database issue): D700–D705. Published online 2011 Nov 21. doi: 10.1093/nar/gkr1029
PMCID:
PMC3245034
AbstractArticlePDF–103K
12.
A Single Heterochromatin Boundary Element Imposes Position-Independent Antisilencing Activity in Saccharomyces cerevisiae Minichromosomes
Sangita A. Chakraborty, Robert T. Simpson, Sergei A. Grigoryev
PLoS One. 2011; 6(9): e24835. Published online 2011 Sep 16. doi: 10.1371/journal.pone.0024835
PMCID:
PMC3174977
AbstractArticlePDF–1.4M
13.
Saccharomyces cerevisiae S288C genome annotation: a working hypothesis
Dianna G. Fisk, Catherine A. Ball, Kara Dolinski, Stacia R. Engel, Eurie L. Hong, Laurie Issel-Tarver, Katja Schwartz, Anand Sethuraman, David Botstein, J. Michael Cherry, The Saccharomyces Genome Database Project
Yeast. Author manuscript; available in PMC 2011 Feb 16.
Published in final edited form as: Yeast. 2006 Sep; 23(12): 857–865. doi: 10.1002/yea.1400
PMCID:
PMC3040122
AbstractArticlePDF–122K
14.
Visualization of the protein-coding regions with a self adaptive spectral rotation approach
Bo Chen, Ping Ji
Nucleic Acids Res. 2011 Jan; 39(1): e3. Published online 2010 Oct 14. doi: 10.1093/nar/gkq891
PMCID:
PMC3017620
AbstractArticlePDF–5.3M
15.
The Divalent Metal Transporter Homologues SMF-1/2 Mediate Dopamine Neuron Sensitivity in Caenorhabditis elegans Models of Manganism and Parkinson Disease
Raja Settivari, Jennifer LeVora, Richard Nass
J Biol Chem. 2009 Dec 18; 284(51): 35758–35768. Published online 2009 Sep 30. doi: 10.1074/jbc.M109.051409
PMCID:
PMC2791006
AbstractArticlePDF–2.5M
16.
Scp160p associates with specific mRNAs in yeast
Ai-Min Li, Alice Watson, Judith L. Fridovich-Keil
Nucleic Acids Res. 2003 Apr 1; 31(7): 1830–1837. doi: 10.1093/nar/gkg284
PMCID:
PMC152800
AbstractArticlePDF–125K
17.
The Chloroplastic GrpE Homolog of Chlamydomonas: Two Isoforms Generated by Differential Splicing
Michael Schroda, Olivier Vallon, Julian P. Whitelegge, Christoph F. Beck, Francis-André Wollman
Plant Cell. 2001 Dec; 13(12): 2823–2840. doi: 10.1105/tpc.010202
PMCID:
PMC139491
AbstractArticlePDF–669K
18.
Pervasive properties of the genomic signature
Robert W Jernigan, Robert H Baran
BMC Genomics. 2002; 3: 23. Published online 2002 Aug 9. doi: 10.1186/1471-2164-3-23
PMCID:
PMC126251
AbstractArticlePDF–288K
19.
Identification of four families of yCCR4- and Mg2+-dependent endonuclease-related proteins in higher eukaryotes, and characterization of orthologs of yCCR4 with a conserved leucine-rich repeat essential for hCAF1/hPOP2 binding
Anne Dupressoir, Anne-Pierre Morel, Willy Barbot, Marie-Paule Loireau, Laura Corbo, Thierry Heidmann
BMC Genomics. 2001; 2: 9. Published online 2001 Nov 22. doi: 10.1186/1471-2164-2-9
PMCID:
PMC61044
AbstractArticlePDF–611K

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