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Select item 67360451.

Intraspecific Diversity of Fission Yeast Mitochondrial Genomes

Yu-Tian Tao, Fang Suo, Sergio Tusso, Yan-Kai Wang, Song Huang, Jochen B W Wolf, Li-Lin Du

Genome Biol Evol. 2019 Aug; 11(8): 2312–2329. Published online 2019 Jul 25. doi: 10.1093/gbe/evz165

PMCID:: PMC6736045

Abstract Article PDF–1.3M

Select item 64871452.

Linking De Novo Assembly Results with Long DNA Reads Using the dnaasm-link Application

Wiktor Kuśmirek, Wiktor Franus, Robert Nowak

Biomed Res Int. 2019; 2019: 7847064. Published online 2019 Apr 11. doi: 10.1155/2019/7847064

PMCID:: PMC6487145

Abstract Article PDF–896K

Select item 64862353.

Whole-Genome Sequence of an Isogenic Haploid Strain, Saccharomyces cerevisiae IR-2idA30(MATa), Established from the Industrial Diploid Strain IR-2

Kazuhiro E. Fujimori, Yosuke Kobayashi, Taisuke Seike, Takehiko Sahara, Satoru Ohgiya, Yoichi Kamagata

Microbiol Resour Announc. 2019 Apr; 8(17): e00018-19. Published online 2019 Apr 25. doi: 10.1128/MRA.00018-19

PMCID:: PMC6486235

Abstract Article PDF–137K

Select item 63626024.

A comparative evaluation of hybrid error correction methods for error-prone long reads

Shuhua Fu, Anqi Wang, Kin Fai Au

Genome Biol. 2019; 20: 26. Published online 2019 Feb 4. doi: 10.1186/s13059-018-1605-z

PMCID:: PMC6362602

Abstract Article PDF–2.3M

Select item 54667105.

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer

Benjamin Istace, Anne Friedrich, Léo d'Agata, Sébastien Faye, Emilie Payen, Odette Beluche, Claudia Caradec, Sabrina Davidas, Corinne Cruaud, Gianni Liti, Arnaud Lemainque, Stefan Engelen, Patrick Wincker, Joseph Schacherer, Jean-Marc Aury

Gigascience. 2017 Feb; 6(2): 1–13. Published online 2017 Jan 7. doi: 10.1093/gigascience/giw018

PMCID:: PMC5466710

Abstract Article PDF–1.0M

Select item 53879946.

Organellar Genomes from a ∼5,000-Year-Old Archaeological Maize Sample Are Closely Related to NB Genotype

Bernardo Pérez-Zamorano, Miguel Vallebueno-Estrada, Javier Martínez González, Angel García Cook, Rafael Montiel, Jean-Philippe Vielle-Calzada, Luis Delaye

Genome Biol Evol. 2017 Apr; 9(4): 904–915. Published online 2017 Apr 1. doi: 10.1093/gbe/evx048

PMCID:: PMC5387994

Abstract Article PDF–882K

Select item 52165587.

Competition assays and physiological experiments of soil and phyllosphere yeasts identify Candida subhashii as a novel antagonist of filamentous fungi

Maja Hilber-Bodmer, Michael Schmid, Christian H. Ahrens, Florian M. Freimoser

BMC Microbiol. 2017; 17: 4. Published online 2017 Jan 5. doi: 10.1186/s12866-016-0908-z

PMCID:: PMC5216558

Abstract Article PDF–1.3M

Select item 48722368.

Irc3 is a mitochondrial DNA branch migration enzyme

Ilja Gaidutšik, Tiina Sedman, Sirelin Sillamaa, Juhan Sedman

Sci Rep. 2016; 6: 26414. Published online 2016 May 19. doi: 10.1038/srep26414

PMCID:: PMC4872236

Abstract Article PDF–1.3M

Select item 48560739.

Massive Amplification at an Unselected Locus Accompanies Complex Chromosomal Rearrangements in Yeast

Agnès Thierry, Varun Khanna, Bernard Dujon

G3 (Bethesda) 2016 May; 6(5): 1201–1215. Published online 2016 Mar 4. doi: 10.1534/g3.115.024547

PMCID:: PMC4856073

Abstract Article PDF–3.5M

Select item 473960310.

Complete mitochondrial genome of the Verticillium-wilt causing plant pathogen Verticillium nonalfalfae

Vid Jelen, Ronnie de Jonge, Yves Van de Peer, Branka Javornik, Jernej Jakše

PLoS One. 2016; 11(2): e0148525. Published online 2016 Feb 3. doi: 10.1371/journal.pone.0148525

PMCID:: PMC4739603

Abstract Article PDF–2.4M

Select item 472731011.

Extracting DNA words based on the sequence features: non-uniform distribution and integrity

Zhi Li, Hongyan Cao, Yuehua Cui, Yanbo Zhang

Theor Biol Med Model. 2016; 13: 2. Published online 2016 Jan 25. doi: 10.1186/s12976-016-0028-3

PMCID:: PMC4727310

Abstract Article PDF–785K

Select item 465123212.

The Genome Sequence of Saccharomyces eubayanus and the Domestication of Lager-Brewing Yeasts

EmilyClare Baker, Bing Wang, Nicolas Bellora, David Peris, Amanda Beth Hulfachor, Justin A. Koshalek, Marie Adams, Diego Libkind, Chris Todd Hittinger

Mol Biol Evol. 2015 Nov; 32(11): 2818–2831. Published online 2015 Aug 11. doi: 10.1093/molbev/msv168

PMCID:: PMC4651232

Abstract Article PDF–996K

Select item 403825713.

HeteroGenome: database of genome periodicity

Maria Chaley, Vladimir Kutyrkin, Gayane Tulbasheva, Elena Teplukhina, Nafisa Nazipova

Database (Oxford) 2014; 2014: bau040. Published online 2014 May 24. doi: 10.1093/database/bau040

PMCID:: PMC4038257

Abstract Article PDF–2.2M

Select item 401955514.

Mitochondrial Genome of Phlebia radiata Is the Second Largest (156 kbp) among Fungi and Features Signs of Genome Flexibility and Recent Recombination Events

Heikki Salavirta, Ilona Oksanen, Jaana Kuuskeri, Miia Mäkelä, Pia Laine, Lars Paulin, Taina Lundell

PLoS One. 2014; 9(5): e97141. Published online 2014 May 13. doi: 10.1371/journal.pone.0097141

PMCID:: PMC4019555

Abstract Article PDF–1.2M

Select item 396247915.

The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now

Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry

G3 (Bethesda) 2014 Mar; 4(3): 389–398. Published online 2013 Dec 27. doi: 10.1534/g3.113.008995

PMCID:: PMC3962479

Abstract Article PDF–1006K

Select item 384707216.

Evidence for inter-specific recombination among the mitochondrial genomes of Fusarium species in the Gibberella fujikuroi complex

Gerda Fourie, Nicolaas A van der Merwe, Brenda D Wingfield, Mesfin Bogale, Bettina Tudzynski, Michael J Wingfield, Emma T Steenkamp

BMC Genomics. 2013; 14: 605. Published online 2013 Sep 8. doi: 10.1186/1471-2164-14-605

PMCID:: PMC3847072

Abstract Article PDF–794K

Select item 372667417.

Optimizing Information in Next-Generation-Sequencing (NGS) Reads for Improving De Novo Genome Assembly

Tsunglin Liu, Cheng-Hung Tsai, Wen-Bin Lee, Jung-Hsien Chiang

PLoS One. 2013; 8(7): e69503. Published online 2013 Jul 29. doi: 10.1371/journal.pone.0069503

PMCID:: PMC3726674

Abstract Article PDF–2.1M

Select item 372221118.

Starvation-Associated Genome Restructuring Can Lead to Reproductive Isolation in Yeast

Evgueny Kroll, Scott Coyle, Barbara Dunn, Gregory Koniges, Anthony Aragon, Jeremy Edwards, Frank Rosenzweig

PLoS One. 2013; 8(7): e66414. Published online 2013 Jul 24. doi: 10.1371/journal.pone.0066414

PMCID:: PMC3722211

Abstract Article PDF–577K

Select item 340073819.

Mutations in the mitochondrial tRNA^Ser(AGY) gene are associated with deafness, retinal degeneration, myopathy and epilepsy

Helen AL Tuppen, Karin Naess, Nancy G Kennaway, Mazhor Al-Dosary, Nicole Lesko, John W Yarham, Helene Bruhn, Rolf Wibom, Inger Nennesmo, Richard G Weleber, Emma L Blakely, Robert W Taylor, Robert McFarland

Eur J Hum Genet. 2012 Aug; 20(8): 897–904. Published online 2012 Feb 29. doi: 10.1038/ejhg.2012.44