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Items: 1 to 20 of 139

1.
Preclinical evaluation of AT-527, a novel guanosine nucleotide prodrug with potent, pan-genotypic activity against hepatitis C virus
Steven S. Good, Adel Moussa, Xiao-Jian Zhou, Keith Pietropaolo, Jean-Pierre Sommadossi
PLoS One. 2020; 15(1): e0227104. Published online 2020 Jan 8. doi: 10.1371/journal.pone.0227104
PMCID:
PMC6949113
AbstractArticlePDF–2.2M
2.
Genome Sequence of an Unknown Subtype of Hepatitis C Virus Genotype 6: Another Piece for the Taxonomic Puzzle
Martin Schou Pedersen, Sarah Mollerup, Lone Gilmor Nielsen, Håvard Jenssen, Jens Bukh, Kristian Schønning
Microbiol Resour Announc. 2019 Oct; 8(42): e01030-19. Published online 2019 Oct 17. doi: 10.1128/MRA.01030-19
PMCID:
PMC6797537
AbstractArticlePDF–624K
3.
Hepatitis C virus genotype 1 and 2 recombinant genomes and the phylogeographic history of the 2k/1b lineage
Reilly Hostager, Manon Ragonnet-Cronin, Ben Murrell, Charlotte Hedskog, Anu Osinusi, Simone Susser, Christoph Sarrazin, Evguenia Svarovskaia, Joel O Wertheim
Virus Evol. 2019 Jul; 5(2): vez041. Published online 2019 Oct 9. doi: 10.1093/ve/vez041
PMCID:
PMC6785677
AbstractArticlePDF–526K
4.
Computational analysis of naturally occurring resistance-associated substitutions in genes NS3, NS5A, and NS5B among 86 subtypes of hepatitis C virus worldwide
Ruihong Wu, Dongfeng Geng, Xiumei Chi, Xiaomei Wang, Xiuzhu Gao, Hongqin Xu, Ying Shi, Yazhe Guan, Yang Wang, Jinglan Jin, Yanhua Ding, Junqi Niu
Infect Drug Resist. 2019; 12: 2987–3015. Published online 2019 Sep 19. doi: 10.2147/IDR.S218584
PMCID:
PMC6756830
AbstractArticlePDF–2.8M
5.
Amino Acid Substitutions in Genotype 3a Hepatitis C Virus Polymerase Protein Affect Responses to Sofosbuvir
Peter A.C. Wing, Meleri Jones, Michelle Cheung, Sampath DaSilva, Connor Bamford, Wing-Yiu Jason Lee, Elihu Aranday-Cortes, Ana Da Silva Filipe, John McLauchlan, David Smith, William Irving, Morven Cunningham, Azim Ansari, Eleanor Barnes, Graham R. Foster
Gastroenterology. 2019 Sep; 157(3): 692–704.e9. doi: 10.1053/j.gastro.2019.05.007
PMCID:
PMC6739484
AbstractArticle
6.
TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data
Jiao Chen, Jiating Huang, Yanni Sun
BMC Bioinformatics. 2019; 20: 305. Published online 2019 Jun 4. doi: 10.1186/s12859-019-2878-2
PMCID:
PMC6549370
AbstractArticlePDF–1.0M
7.
Changing Trends in International Versus Domestic HCV Transmission in HIV-Positive Men Who Have Sex With Men: A Perspective for the Direct-Acting Antiviral Scale-Up Era
Luisa Salazar-Vizcaya, Roger D Kouyos, Karin J Metzner, Kamila Caraballo Cortes, Jürg Böni, Cyril Shah, Jan Fehr, Dominique L Braun, Enos Bernasconi, Herbert A Mbunkah, Matthias Hoffmann, Niklaus Labhardt, Matthias Cavassini, Mathieu Rougemont, Huldrych F Günthard, Olivia Keiser, Andri Rauch, the Swiss HIV Cohort Study
J Infect Dis. 2019 Jul 1; 220(1): 91–99. Published online 2019 Feb 13. doi: 10.1093/infdis/jiz069
PMCID:
PMC6548898
AbstractArticlePDF–3.1M
8.
Interpreting Viral Deep Sequencing Data with GLUE
Joshua B. Singer, Emma C. Thomson, Joseph Hughes, Elihu Aranday-Cortes, John McLauchlan, Ana da Silva Filipe, Lily Tong, Carmen F. Manso, Robert J. Gifford, David L. Robertson, Eleanor Barnes, M. Azim Ansari, Jean L. Mbisa, David F. Bibby, Daniel Bradshaw, David Smith
Viruses. 2019 Apr; 11(4): 323. Published online 2019 Apr 3. doi: 10.3390/v11040323
PMCID:
PMC6520954
AbstractArticlePDF–671K
9.
Multiple myeloma immunoglobulin lambda translocations portend poor prognosis
Benjamin G. Barwick, Paola Neri, Nizar J. Bahlis, Ajay K. Nooka, Madhav V. Dhodapkar, David L. Jaye, Craig C. Hofmeister, Jonathan L. Kaufman, Vikas A. Gupta, Daniel Auclair, Jonathan J. Keats, Sagar Lonial, Paula M. Vertino, Lawrence H. Boise
Nat Commun. 2019; 10: 1911. Published online 2019 Apr 23. doi: 10.1038/s41467-019-09555-6
PMCID:
PMC6478743
AbstractArticlePDF–9.0M
10.
StaPLs: versatile genetically encoded modules for engineering drug-inducible proteins
Conor L. Jacobs, Ryan K. Badiee, Michael Z. Lin
Nat Methods. Author manuscript; available in PMC 2019 Apr 10.
Published in final edited form as: Nat Methods. 2018 Jul; 15(7): 523–526. Published online 2018 Jul 2. doi: 10.1038/s41592-018-0041-z
PMCID:
PMC6456726
AbstractArticlePDF–626K
11.
Perilipin 5 alleviates HCV NS5A-induced lipotoxic injuries in liver
Jin Zhang, Xing Gao, Yuan Yuan, Chao Sun, Yuanlin Zhao, Liming Xiao, Ying Yang, Yu Gu, Risheng Yang, Peizhen Hu, Lijun Zhang, Chao Wang, Jing Ye
Lipids Health Dis. 2019; 18: 87. Published online 2019 Apr 6. doi: 10.1186/s12944-019-1022-7
PMCID:
PMC6451786
AbstractArticlePDF–4.8M
12.
Infrequent Development of Resistance in Genotype 1–6 Hepatitis C Virus–Infected Subjects Treated With Sofosbuvir in Phase 2 and 3 Clinical Trials
Evguenia S. Svarovskaia, Hadas Dvory-Sobol, Neil Parkin, Christy Hebner, Viktoria Gontcharova, Ross Martin, Wen Ouyang, Bin Han, Simin Xu, Karin Ku, Sophia Chiu, Edward Gane, Ira M. Jacobson, David R. Nelson, Eric Lawitz, David L. Wyles, Neby Bekele, Diana Brainard, William T. Symonds, John G. McHutchison, Michael D. Miller, Hongmei Mo
Clin Infect Dis. 2014 Dec 15; 59(12): 1666–1674. Published online 2014 Sep 28. doi: 10.1093/cid/ciu697
PMCID:
PMC6433438
AbstractArticlePDF–220K
13.
Analysis of resistance-associated substitutions in acute hepatitis C virus infection by deep sequencing across six genotypes and three continents.
Auda A. Eltahla, Chaturaka Rodrigo, Brigid Betz-Stablein, Jason Grebely, Tanya Applegate, Fabio Luciani, Janke Schinkel, Gregory J. Dore, Kimberly Page, Julie Bruneau, Meghan D. Morris, Andrea L. Cox, Arthur Y. Kim, Naglaa H. Shoukry, Georg M. Lauer, Lisa Maher, Margaret Hellard, Maria Prins, Andrew R. Lloyd, Rowena A. Bull
J Viral Hepat. Author manuscript; available in PMC 2019 Mar 17.
Published in final edited form as: J Viral Hepat. 2017 Jan; 24(1): 37–42. Published online 2016 Sep 25. doi: 10.1111/jvh.12615
PMCID:
PMC6421067
AbstractArticlePDF–1.0M
14.
A latent class approach to identify multi‐risk profiles associated with phylogenetic clustering of recent hepatitis C virus infection in Australia and New Zealand from 2004 to 2015
Sofia R Bartlett, Tanya L Applegate, Brendan P Jacka, Marianne Martinello, Francois MJ Lamoury, Mark Danta, Daniel Bradshaw, David Shaw, Andrew R Lloyd, Margaret Hellard, Gregory J Dore, Gail V Matthews, Jason Grebely
J Int AIDS Soc. 2019 Feb; 22(2): e25222. Published online 2019 Feb 12. doi: 10.1002/jia2.25222
PMCID:
PMC6371014
AbstractArticlePDF–866K
15.
Genomic-Scale Interaction Involving Complementary Sequences in the Hepatitis C Virus 5′UTR Domain IIa and the RNA-Dependent RNA Polymerase Coding Region Promotes Efficient Virus Replication
Elodie Rance, Jerome E. Tanner, Caroline Alfieri
Viruses. 2019 Jan; 11(1): 17. Published online 2018 Dec 28. doi: 10.3390/v11010017
PMCID:
PMC6357077
AbstractArticlePDF–1.8M
16.
Screening human cell lines for viral infections applying RNA-Seq data analysis
Cord C. Uphoff, Claudia Pommerenke, Sabine A. Denkmann, Hans G. Drexler
PLoS One. 2019; 14(1): e0210404. Published online 2019 Jan 10. doi: 10.1371/journal.pone.0210404
PMCID:
PMC6328144
AbstractArticlePDF–1.5M
17.
GLUE: a flexible software system for virus sequence data
Joshua B. Singer, Emma C. Thomson, John McLauchlan, Joseph Hughes, Robert J. Gifford
BMC Bioinformatics. 2018; 19: 532. Published online 2018 Dec 18. doi: 10.1186/s12859-018-2459-9
PMCID:
PMC6299651
AbstractArticlePDF–1.4M
18.
Quasispecies Changes with Distinctive Point Mutations in the Hepatitis C Virus Internal Ribosome Entry Site (IRES) Derived from PBMCs and Plasma
Luca Mercuri, Emma C. Thomson, Joseph Hughes, Peter Karayiannis
Adv Virol. 2018; 2018: 4835252. Published online 2018 Nov 19. doi: 10.1155/2018/4835252
PMCID:
PMC6276526
AbstractArticlePDF–1.2M
19.
Prevalence of resistance-associated substitutions to direct-acting antiviral agents in hemodialysis and renal transplant patients infected with hepatitis C virus
Rita Chelly Felix Tavares, Ana Cristina de Castro Amaral Feldner, João Renato Rebello Pinho, Fernanda de Mello Malta, Roberto José Carvalho-Filho, Rúbia Anita Ferraz Santana, Vanessa Fusco Duarte de Castro, Gregório Tadeu Fernando Dastoli, Juliana Custódio Lima, Maria Lucia Cardoso Gomes Ferraz
Infect Drug Resist. 2018; 11: 1993–2000. Published online 2018 Oct 25. doi: 10.2147/IDR.S169512
Correction in:
Infect Drug Resist. 2019; 12: 65.
PMCID:
PMC6208931
AbstractArticlePDF–166K
20.
Prevalence and Genotype Distribution of Hepatitis C Virus Infection among Patients with Type 2 Diabetes Mellitus
Fatemeh Farshadpour, Reza Taherkhani, Mohammad Reza Ravanbod, Seyed Sajjad Eghbali
Med Princ Pract. 2018 Sep; 27(4): 308–316. Published online 2018 Apr 5. doi: 10.1159/000488985
PMCID:
PMC6170927
AbstractArticlePDF–358K

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