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Select item 95260751.

In search of a Drosophila core cellular network with single-cell transcriptome data

Ming Yang, Benjamin R Harrison, Daniel E L Promislow

G3 (Bethesda) 2022 Oct; 12(10): jkac212. Published online 2022 Aug 17. doi: 10.1093/g3journal/jkac212

PMCID:: PMC9526075

Abstract Article PDF–4.7M

Select item 92378402.

Ribbon boosts ribosomal protein gene expression to coordinate organ form and function

Rajprasad Loganathan, Daniel C. Levings, Ji Hoon Kim, Michael B. Wells, Hannah Chiu, Yifan Wu, Matthew Slattery, Deborah J. Andrew

J Cell Biol. 2022 Apr 4; 221(4): e202110073. Published online 2022 Feb 23. doi: 10.1083/jcb.202110073

PMCID:: PMC9237840

Abstract Article PDF–12M

Select item 87334733.

The disease-associated proteins Drosophila Nab2 and Ataxin-2 interact with shared RNAs and coregulate neuronal morphology

J Christopher Rounds, Edwin B Corgiat, Changtian Ye, Joseph A Behnke, Seth M Kelly, Anita H Corbett, Kenneth H Moberg

Genetics. 2022 Jan; 220(1): iyab175. Published online 2022 Jan 3. doi: 10.1093/genetics/iyab175

PMCID:: PMC8733473

Abstract Article PDF–2.4M

Select item 86644864.

Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes

Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis

G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349

PMCID:: PMC8664486

Abstract Article PDF–3.1M

Select item 86452075.

In vivo proximity biotin ligation identifies the interactome of Egalitarian, a Dynein cargo adaptor

Frederick C. Baker, Hannah Neiswender, Rajalakshmi Veeranan-Karmegam, Graydon B. Gonsalvez

Development. 2021 Nov 15; 148(22): dev199935. Published online 2021 Nov 18. doi: 10.1242/dev.199935

PMCID:: PMC8645207

Abstract Article

Select item 84688276.

Identification of GOLPH3 Partners in Drosophila Unveils Potential Novel Roles in Tumorigenesis and Neural Disorders

Stefano Sechi, Angela Karimpour-Ghahnavieh, Anna Frappaolo, Laura Di Francesco, Roberto Piergentili, Eugenia Schininà, Pier Paolo D’Avino, Maria Grazia Giansanti

Cells. 2021 Sep; 10(9): 2336. Published online 2021 Sep 6. doi: 10.3390/cells10092336

PMCID:: PMC8468827

Abstract Article PDF–4.1M

Select item 79096297.

Cross-species identification of PIP5K1-, splicing- and ubiquitin-related pathways as potential targets for RB1-deficient cells

Andrey A. Parkhitko, Arashdeep Singh, Sharon Hsieh, Yanhui Hu, Richard Binari, Christopher J. Lord, Sridhar Hannenhalli, Colm J. Ryan, Norbert Perrimon

PLoS Genet. 2021 Feb; 17(2): e1009354. Published online 2021 Feb 16. doi: 10.1371/journal.pgen.1009354

PMCID:: PMC7909629

Abstract Article PDF–4.6M

Select item 75286538.

Two-step mechanism for selective incorporation of lncRNA into a chromatin modifier

Marisa Müller, Tamas Schauer, Silke Krause, Raffaella Villa, Andreas W Thomae, Peter B Becker

Nucleic Acids Res. 2020 Jul 27; 48(13): 7483–7501. Published online 2020 Jun 8. doi: 10.1093/nar/gkaa492

PMCID:: PMC7528653

Abstract Article PDF–3.6M

Select item 74799389.

Ribosomal proteins: mutant phenotypes by the numbers and associated gene expression changes

Michael Polymenis

Open Biol. 2020 Aug; 10(8): 200114. Published online 2020 Aug 19. doi: 10.1098/rsob.200114

PMCID:: PMC7479938

Abstract Article PDF–1.0M

Select item 742335910.

TRIBE editing reveals specific mRNA targets of eIF4E-BP in Drosophila and in mammals

Hua Jin, Weijin Xu, Reazur Rahman, Daxiang Na, Allegra Fieldsend, Wei Song, Shaobo Liu, Chong Li, Michael Rosbash

Sci Adv. 2020 Aug; 6(33): eabb8771. Published online 2020 Aug 12. doi: 10.1126/sciadv.abb8771

PMCID:: PMC7423359

Abstract Article PDF–904K

Select item 711682311.

Proteotoxic stress is a driver of the loser status and of cell competition

Michael E. Baumgartner, Michael P. Dinan, Paul F. Langton, Iwo Kucinski, Eugenia Piddini

Nat Cell Biol. Author manuscript; available in PMC 2021 Jul 25.

Published in final edited form as: Nat Cell Biol. 2021 Feb 1; 23(2): 136–146. Published online 2021 Jan 25. doi: 10.1038/s41556-020-00627-0

PMCID:: PMC7116823

Abstract Article PDF–9.3M

Select item 696157812.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 574064813.

Improved detection of synthetic lethal interactions in Drosophila cells using variable dose analysis (VDA)

Benjamin E. Housden, Zhongchi Li, Colleen Kelley, Yuanli Wang, Yanhui Hu, Alexander J. Valvezan, Brendan D. Manning, Norbert Perrimon

Proc Natl Acad Sci U S A. 2017 Dec 12; 114(50): E10755–E10762. Published online 2017 Nov 28. doi: 10.1073/pnas.1713362114

PMCID:: PMC5740648

Abstract Article PDF–1.2M

Select item 571014214.

A mutually exclusive stem–loop arrangement in roX2 RNA is essential for X-chromosome regulation in Drosophila

Ibrahim Avsar Ilik, Daniel Maticzka, Plamen Georgiev, Noel Marie Gutierrez, Rolf Backofen, Asifa Akhtar

Genes Dev. 2017 Oct 1; 31(19): 1973–1987. doi: 10.1101/gad.304600.117

PMCID:: PMC5710142

Abstract Article PDF–11M

Select item 570780515.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900216.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 527052117.

The mRNA transportome of the BicD/Egl transport machinery

Paula Vazquez-Pianzola, Bogdan Schaller, Martino Colombo, Dirk Beuchle, Samuel Neuenschwander, Anne Marcil, Rémy Bruggmann, Beat Suter

RNA Biol. 2017; 14(1): 73–89. Published online 2016 Nov 1. doi: 10.1080/15476286.2016.1251542

PMCID:: PMC5270521

Abstract Article PDF–2.1M

Select item 514468018.

Ultra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryos reveals hundreds of conserved translated sORFs

Hongmei Li, Chuansheng Hu, Ling Bai, Hua Li, Mingfa Li, Xiaodong Zhao, Daniel M. Czajkowsky, Zhifeng Shao

DNA Res. 2016 Dec; 23(6): 571–580. Published online 2016 Aug 24. doi: 10.1093/dnares/dsw040

PMCID:: PMC5144680

Abstract Article PDF–688K

Select item 502578219.

Proteome-wide association studies identify biochemical modules associated with a wing-size phenotype in Drosophila melanogaster

Hirokazu Okada, H. Alexander Ebhardt, Sibylle Chantal Vonesch, Ruedi Aebersold, Ernst Hafen

Nat Commun. 2016; 7: 12649. Published online 2016 Sep 1. doi: 10.1038/ncomms12649

PMCID:: PMC5025782

Abstract Article PDF–2.2M

Select item 473800520.

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili

Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062

PMCID:: PMC4738005

Abstract Article PDF–205K

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