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Items: 1 to 20 of 29

1.
Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes
Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis
G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349
PMCID:
PMC8664486
AbstractArticlePDF–3.1M
2.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
3.
Hidden genetic variation shapes the structure of functional elements in Drosophila
Mahul Chakraborty, Nicholas W. VanKuren, Roy Zhao, Xinwen Zhang, Shannon Kalsow, J. J. Emerson
Nat Genet. 2018; 50(1): 20–25. Published online 2017 Dec 18. doi: 10.1038/s41588-017-0010-y
PMCID:
PMC5742068
AbstractArticlePDF–2.2M
4.
The spliceosomal protein SF3B5 is a novel component of Drosophila SAGA that functions in gene expression independent of splicing
Rachel Stegeman, Peyton J. Spreacker, Selene K. Swanson, Robert Stephenson, Laurence Florens, Michael P. Washburn, Vikki M. Weake
J Mol Biol. Author manuscript; available in PMC 2017 Sep 11.
Published in final edited form as: J Mol Biol. 2016 Sep 11; 428(18): 3632–3649. Published online 2016 May 13. doi: 10.1016/j.jmb.2016.05.009
PMCID:
PMC5011000
AbstractArticlePDF–1.3M
5.
mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster
Gildas Lepennetier, Francesco Catania
G3 (Bethesda) 2016 Jun; 6(6): 1617–1626. Published online 2016 Mar 28. doi: 10.1534/g3.116.029231
PMCID:
PMC4889658
AbstractArticlePDF–1.5M
6.
Genes conserved in bilaterians but jointly lost with Myc during nematode evolution are enriched in cell proliferation and cell migration functions
Albert J. Erives
Dev Genes Evol. 2015; 225(5): 259–273. Published online 2015 Jul 15. doi: 10.1007/s00427-015-0508-1
PMCID:
PMC4568025
AbstractArticlePDF–2.8M
7.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
8.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
9.
Genome-wide RNAi Screen Identifies Networks Involved in Intestinal Stem Cell Regulation in Drosophila
Xiankun Zeng, Lili Han, Shree Ram Singh, Hanhan Liu, Ralph A. Neumüller, Dong Yan, Yanhui Hu, Ying Liu, Wei Liu, Xinhua Lin, Steven X. Hou
Cell Rep. Author manuscript; available in PMC 2016 Feb 24.
Published in final edited form as: Cell Rep. 2015 Feb 24; 10(7): 1226–1238. Published online 2015 Feb 19. doi: 10.1016/j.celrep.2015.01.051
PMCID:
PMC4420031
AbstractArticlePDF–2.0M
10.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
11.
Loss of Drosophila Ataxin-7, a SAGA subunit, reduces H2B ubiquitination and leads to neural and retinal degeneration
Ryan D. Mohan, George Dialynas, Vikki M. Weake, Jianqi Liu, Skylar Martin-Brown, Laurence Florens, Michael P. Washburn, Jerry L. Workman, Susan M. Abmayr
Genes Dev. 2014 Feb 1; 28(3): 259–272. doi: 10.1101/gad.225151.113
PMCID:
PMC3923968
AbstractArticlePDF–2.5M
12.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
13.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
14.
Microarray-Based Capture of Novel Expressed Cell Type–Specific Transfrags (CoNECT) to Annotate Tissue-Specific Transcription in Drosophila melanogaster
X. Hong, H. Doddapaneni, J. M. Comeron, M. J. Rodesch, H. A. Halvensleben, C. Y. Nien, F. Bolei, R. Metpally, T. A. Richmond, T. J. Albert, J. R. Manak
G3 (Bethesda) 2012 Aug; 2(8): 873–882. Published online 2012 Aug 1. doi: 10.1534/g3.112.003194
PMCID:
PMC3411243
AbstractArticlePDF–1.3M
15.
ATAC-king the complexity of SAGA during evolution
Gianpiero Spedale, H.Th. Marc Timmers, W.W.M. Pim Pijnappel
Genes Dev. 2012 Mar 15; 26(6): 527–541. doi: 10.1101/gad.184705.111
PMCID:
PMC3315114
AbstractArticlePDF–868K
16.
Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation
Vikki M. Weake, Jamie O. Dyer, Christopher Seidel, Andrew Box, Selene K. Swanson, Allison Peak, Laurence Florens, Michael P. Washburn, Susan M. Abmayr, Jerry L. Workman
Genes Dev. 2011 Jul 15; 25(14): 1499–1509. doi: 10.1101/gad.2046211
PMCID:
PMC3143940
AbstractArticlePDF–1.1M
17.
Genome-Wide Analysis of Self-Renewal in Drosophila Neural Stem Cells by Transgenic RNAi
Ralph A. Neumüller, Constance Richter, Anja Fischer, Maria Novatchkova, Klaus G. Neumüller, Juergen A. Knoblich
Cell Stem Cell. 2011 May 6; 8(5): 580–593. doi: 10.1016/j.stem.2011.02.022
PMCID:
PMC3093620
AbstractArticle
18.
Adaptive impact of the chimeric gene Quetzalcoatl in Drosophila melanogaster
Rebekah L. Rogers, Trevor Bedford, Ana M. Lyons, Daniel L. Hartl
Proc Natl Acad Sci U S A. 2010 Jun 15; 107(24): 10943–10948. Published online 2010 Jun 1. doi: 10.1073/pnas.1006503107
PMCID:
PMC2890713
AbstractArticlePDF–696K
19.
Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin
Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker
Science. Author manuscript; available in PMC 2010 Feb 19.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1625–1628. doi: 10.1126/science.1139816
PMCID:
PMC2825053
AbstractArticlePDF–858K
20.
The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin
Christopher D. Smith, ShengQiang Shu, Christopher J. Mungall, Gary H. Karpen
Science. Author manuscript; available in PMC 2010 Feb 10.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1586. doi: 10.1126/science.1139815
Correction in:
volume 317 on page 1325
PMCID:
PMC2819280
AbstractArticlePDF–1.3M

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