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Items: 20

1.
Characterization of metal binding of bifunctional kinase/phosphatase AceK and implication in activity modulation
Xiaoying Zhang, Qingya Shen, Zhen Lei, Qianyi Wang, Jimin Zheng, Zongchao Jia
Sci Rep. 2019; 9: 9198. Published online 2019 Jun 24. doi: 10.1038/s41598-019-45704-z
Correction in:
Sci Rep. 2020; 10: 4535.
PMCID:
PMC6591243
AbstractArticlePDF–2.7M
2.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
AbstractArticlePDF–1.1M
3.
Structural basis of substrate specificity of bifunctional isocitrate dehydrogenase kinase/phosphatase
Susan P. Yates, Thomas E. Edwards, Cassie M. Bryan, Adam J. Stein, Wesley C. Van Voorhis, Peter J. Myler, Lance J. Stewart, Jimin Zheng, Zongchao Jia
Biochemistry. Author manuscript; available in PMC 2012 Sep 27.
Published in final edited form as: Biochemistry. 2011 Sep 27; 50(38): 8103–8106. Published online 2011 Sep 2. doi: 10.1021/bi200809p
PMCID:
PMC3354702
AbstractArticlePDF–1.0M
4.
Purification, crystallization and preliminary X-ray analysis of bifunctional isocitrate dehydrogenase kinase/phosphatase in complex with its substrate, isocitrate dehydrogenase, from Escherichia coli
Jimin Zheng, Alan Xian Ji, Zongchao Jia
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Nov 1; 65(Pt 11): 1153–1156. Published online 2009 Oct 30. doi: 10.1107/S1744309109038718
PMCID:
PMC2777047
AbstractArticlePDF–245K
5.
Purification, crystallization and preliminary X-ray analysis of isocitrate dehydrogenase kinase/phosphatase from Escherichia coli
Jimin Zheng, Daniel C. Lee, Zongchao Jia
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 May 1; 65(Pt 5): 536–539. Published online 2009 Apr 28. doi: 10.1107/S1744309109014729
PMCID:
PMC2675605
AbstractArticlePDF–217K
6.
Robustness in Glyoxylate Bypass Regulation
Guy Shinar, Joshua D. Rabinowitz, Uri Alon
PLoS Comput Biol. 2009 Mar; 5(3): e1000297. Published online 2009 Mar 6. doi: 10.1371/journal.pcbi.1000297
PMCID:
PMC2645677
AbstractArticlePDF–160K
7.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
8.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
9.
Molecular cloning and over-expression of the glyoxylate bypass operon from Escherichia coli ML308.
E M el-Mansi, C MacKintosh, K Duncan, W H Holms, H G Nimmo
Biochem J. 1987 Mar 15; 242(3): 661–665. doi: 10.1042/bj2420661
PMCID:
PMC1147762
SummaryPage BrowsePDF–1.0M
10.
The phosphorylation of Escherichia coli isocitrate dehydrogenase in intact cells.
A C Borthwick, W H Holms, H G Nimmo
Biochem J. 1984 Sep 15; 222(3): 797–804. doi: 10.1042/bj2220797
PMCID:
PMC1144244
SummaryPage BrowsePDF–1.6M
11.
Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes.
F R Blattner, V Burland, G Plunkett, 3rd, H J Sofia, D L Daniels
Nucleic Acids Res. 1993 Nov 25; 21(23): 5408–5417. doi: 10.1093/nar/21.23.5408
PMCID:
PMC310579
SummaryPage BrowsePDF–1.8M
12.
d-Serine Transport System in Escherichia coli K-12
Sharon D. Cosloy
J Bacteriol. 1973 May; 114(2): 679–684. doi: 10.1128/jb.114.2.679-684.1973
PMCID:
PMC251826
SummaryPage BrowsePDF–739K
13.
Isolation, hyperexpression, and sequencing of the aceA gene encoding isocitrate lyase in Escherichia coli.
M Matsuoka, B A McFadden
J Bacteriol. 1988 Oct; 170(10): 4528–4536. doi: 10.1128/jb.170.10.4528-4536.1988
PMCID:
PMC211486
SummaryPage BrowsePDF–2.0M
14.
Nucleotide sequence of aceK, the gene encoding isocitrate dehydrogenase kinase/phosphatase.
D J Klumpp, D W Plank, L J Bowdin, C S Stueland, T Chung, D C LaPorte
J Bacteriol. 1988 Jun; 170(6): 2763–2769. doi: 10.1128/jb.170.6.2763-2769.1988
PMCID:
PMC211200
SummaryPage BrowsePDF–1.4M
15.
Glyoxylate bypass operon of Escherichia coli: cloning and determination of the functional map.
T Chung, D J Klumpp, D C LaPorte
J Bacteriol. 1988 Jan; 170(1): 386–392. doi: 10.1128/jb.170.1.386-392.1988
PMCID:
PMC210654
SummaryPage BrowsePDF–1.5M
16.
Nucleotide sequence and expression of the aceK gene coding for isocitrate dehydrogenase kinase/phosphatase in Escherichia coli.
J C Cortay, F Bleicher, C Rieul, H C Reeves, A J Cozzone
J Bacteriol. 1988 Jan; 170(1): 89–97. doi: 10.1128/jb.170.1.89-97.1988
PMCID:
PMC210610
SummaryPage BrowsePDF–1.6M
17.
Isocitrate dehydrogenase kinase/phosphatase: aceK alleles that express kinase but not phosphatase activity.
T Ikeda, D C LaPorte
J Bacteriol. 1991 Mar; 173(5): 1801–1806. doi: 10.1128/jb.173.5.1801-1806.1991
PMCID:
PMC207332
SummaryPage BrowsePDF–1.2M
18.
Isocitrate dehydrogenase kinase/phosphatase: identification of mutations which selectively inhibit phosphatase activity.
T P Ikeda, E Houtz, D C LaPorte
J Bacteriol. 1992 Feb; 174(4): 1414–1416. doi: 10.1128/jb.174.4.1414-1416.1992
PMCID:
PMC206440
SummaryPage BrowsePDF–441K
19.
Relative expression of the products of glyoxylate bypass operon: contributions of transcription and translation.
T Chung, E Resnik, C Stueland, D C LaPorte
J Bacteriol. 1993 Jul; 175(14): 4572–4575. doi: 10.1128/jb.175.14.4572-4575.1993
PMCID:
PMC204903
SummaryPage BrowsePDF–691K
20.
Regulated expression of a repressor protein: FadR activates iclR.
L Gui, A Sunnarborg, D C LaPorte
J Bacteriol. 1996 Aug; 178(15): 4704–4709. doi: 10.1128/jb.178.15.4704-4709.1996
PMCID:
PMC178242
SummaryPDF–295K

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