PMC Links for GEO Profiles (Select 10142493) - PMC

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 33911594.

Binding of Phytopolyphenol Piceatannol Disrupts β/γ Subunit Interactions and Rate-limiting Step of Steady-state Rotational Catalysis in Escherichia coli F₁-ATPase

Mizuki Sekiya, Robert K. Nakamoto, Mayumi Nakanishi-Matsui, Masamitsu Futai

J Biol Chem. 2012 Jun 29; 287(27): 22771–22780. Published online 2012 May 11. doi: 10.1074/jbc.M112.374868

PMCID:: PMC3391159

Abstract Article PDF–1.8M

Select item 31091985.

Structure of the ATP synthase catalytic complex (F₁) from Escherichia coli in an auto-inhibited conformation

Gino Cingolani, Thomas M. Duncan

Nat Struct Mol Biol. Author manuscript; available in PMC 2011 Dec 1.

Published in final edited form as: Nat Struct Mol Biol. 2011 Jun; 18(6): 701–707. Published online 2011 May 22. doi: 10.1038/nsmb.2058

PMCID:: PMC3109198

Abstract Article PDF–2.7M

Select item 26677626.

Role of α-Subunit VISIT-DG Sequence Residues Ser-347 and Gly-351 in the Catalytic Sites of Escherichia coli ATP Synthase

Wenzong Li, Laura E. Brudecki, Alan E. Senior, Zulfiqar Ahmad

J Biol Chem. 2009 Apr 17; 284(16): 10747–10754. doi: 10.1074/jbc.M809209200

PMCID:: PMC2667762

Abstract Article PDF–1.0M

Select item 25847007.

Domain compliance and elastic power transmission in rotary F_OF₁-ATPase

Hendrik Sielaff, Henning Rennekamp, André Wächter, Hao Xie, Florian Hilbers, Katrin Feldbauer, Stanley D. Dunn, Siegfried Engelbrecht, Wolfgang Junge

Proc Natl Acad Sci U S A. 2008 Nov 18; 105(46): 17760–17765. Published online 2008 Nov 10. doi: 10.1073/pnas.0807683105

PMCID:: PMC2584700

Abstract Article PDF–802K

Select item 25290068.

A Functionally Important Hydrogen-bonding Network at the β_DP/α_DP Interface of ATP Synthase

Hui Z. Mao, Christopher G. Abraham, Arathianand M. Krishnakumar, Joachim Weber

J Biol Chem. 2008 Sep 5; 283(36): 24781–24788. doi: 10.1074/jbc.M804142200

PMCID:: PMC2529006

Abstract Article PDF–281K

Select item 22688219.

The thermodynamic H⁺/ATP ratios of the H⁺-ATPsynthases from chloroplasts and Escherichia coli

Stefan Steigmiller, Paola Turina, Peter Gräber

Proc Natl Acad Sci U S A. 2008 Mar 11; 105(10): 3745–3750. Published online 2008 Mar 3. doi: 10.1073/pnas.0708356105

PMCID:: PMC2268821

Abstract Article PDF–1011K

Select item 191443810.

A Programmable Optical Angle Clamp for Rotary Molecular Motors

Teuta Pilizota, Thomas Bilyard, Fan Bai, Masamitsu Futai, Hiroyuki Hosokawa, Richard M. Berry

Biophys J. 2007 Jul 1; 93(1): 264–275. Published online 2007 Apr 13. doi: 10.1529/biophysj.106.091074

PMCID:: PMC1914438

Abstract Article PDF–737K

Select item 183860111.

Studies of nucleotide binding to the catalytic sites of Escherichia coli βY331W-F₁-ATPase using fluorescence quenching

Vladimir V. Bulygin, Yakov M. Milgrom

Proc Natl Acad Sci U S A. 2007 Mar 13; 104(11): 4327–4331. Published online 2007 Mar 5. doi: 10.1073/pnas.0700078104

PMCID:: PMC1838601

Abstract Article PDF–401K

Select item 179730912.

Genome-Wide Screening of Genes Required for Swarming Motility in Escherichia coli K-12

Tetsuyoshi Inoue, Ryuji Shingaki, Shotaro Hirose, Kaori Waki, Hirotada Mori, Kazuhiro Fukui

J Bacteriol. 2007 Feb; 189(3): 950–957. Published online 2006 Nov 22. doi: 10.1128/JB.01294-06

PMCID:: PMC1797309

Abstract Article PDF–141K

Select item 168148113.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 153896514.

A functionally inactive, cold-stabilized form of the Escherichia coli F₁F_o ATP synthase

Mikhail A. Galkin, Robert R. Ishmukhametov, Steven B. Vik

Biochim Biophys Acta. Author manuscript; available in PMC 2007 Mar 1.

Published in final edited form as: Biochim Biophys Acta. 2006 Mar; 1757(3): 206–214. Published online 2006 Mar 20. doi: 10.1016/j.bbabio.2006.02.011

PMCID:: PMC1538965

Abstract Article PDF–701K

Select item 153870815.

Random Insertion of a TetR-Inducing Peptide Tag into Escherichia coli Proteins Allows Analysis of Protein Levels by Induction of Reporter Gene Expression

Maximilian Schlicht, Christian Berens, Janko Daam, Wolfgang Hillen

Appl Environ Microbiol. 2006 Aug; 72(8): 5637–5642. doi: 10.1128/AEM.00739-06

PMCID:: PMC1538708

Abstract Article PDF–265K

Select item 145705216.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 133438517.

TCDB: the Transporter Classification Database for membrane transport protein analyses and information

Milton H. Saier, Jr, Can V. Tran, Ravi D. Barabote

Nucleic Acids Res. 2006 Jan 1; 34(Database issue): D181–D186. Published online 2005 Dec 28. doi: 10.1093/nar/gkj001

PMCID:: PMC1334385

Abstract Article PDF–550K

Select item 132520018.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405