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Items: 20

1.
Structural basis of successive adenosine modifications by the conserved ribosomal methyltransferase KsgA
Niklas C Stephan, Anne B Ries, Daniel Boehringer, Nenad Ban
Nucleic Acids Res. 2021 Jun 21; 49(11): 6389–6398. Published online 2021 Jun 4. doi: 10.1093/nar/gkab430
PMCID:
PMC8216452
AbstractArticlePDF–4.8M
2.
Site-directed mutants of 16S rRNA reveal important RNA domains for KsgA function and 30S subunit assembly
Pooja M. Desai, Gloria M. Culver, Jason P. Rife
Biochemistry. Author manuscript; available in PMC 2015 Mar 11.
Published in final edited form as: Biochemistry. 2011 Feb 8; 50(5): 854–863. Published online 2011 Jan 11. doi: 10.1021/bi101005r
PMCID:
PMC4355582
AbstractArticlePDF–879K
3.
Overexpression of RbfA in the absence of the KsgA checkpoint results in impaired translation initiation
Keith Connolly, Gloria Culver
Mol Microbiol. Author manuscript; available in PMC 2014 Mar 1.
Published in final edited form as: Mol Microbiol. 2013 Mar; 87(5): 968–981. Published online 2013 Feb 6. doi: 10.1111/mmi.12145
PMCID:
PMC3583373
AbstractArticlePDF–4.3M
4.
Mechanistic insight into the ribosome biogenesis functions of the ancient protein KsgA
Keith Connolly, Jason P. Rife, Gloria Culver
Mol Microbiol. Author manuscript; available in PMC 2009 Jul 14.
Published in final edited form as: Mol Microbiol. 2008 Dec; 70(5): 1062–1075. doi: 10.1111/j.1365-2958.2008.06485.x
PMCID:
PMC2709978
AbstractArticlePDF–636K
5.
KsgA, a 16S rRNA adenine methyltransferase, has a novel DNA glycosylase/AP lyase activity to prevent mutations in Escherichia coli
Qiu-Mei Zhang-Akiyama, Hironobu Morinaga, Masahiro Kikuchi, Shin-Ichiro Yonekura, Hiroshi Sugiyama, Kazuo Yamamoto, Shuji Yonei
Nucleic Acids Res. 2009 Apr; 37(7): 2116–2125. Published online 2009 Feb 17. doi: 10.1093/nar/gkp057
PMCID:
PMC2673420
AbstractArticlePDF–1.0M
6.
Structural analysis of kasugamycin inhibition of translation
Barbara S Schuwirth, J Michael Day, Cathy W Hau, Gary R Janssen, Albert E Dahlberg, Jamie H Doudna Cate, Antón Vila-Sanjurjo
Nat Struct Mol Biol. Author manuscript; available in PMC 2009 Feb 5.
Published in final edited form as: Nat Struct Mol Biol. 2006 Oct; 13(10): 879–886. Published online 2006 Sep 24. doi: 10.1038/nsmb1150
PMCID:
PMC2636691
AbstractArticlePDF–1.1M
7.
Genetic Interaction Screens with Ordered Overexpression and Deletion Clone Sets Implicate the Escherichia coli GTPase YjeQ in Late Ribosome Biogenesis
Tracey L. Campbell, Eric D. Brown
J Bacteriol. 2008 Apr; 190(7): 2537–2545. Published online 2008 Jan 25. doi: 10.1128/JB.01744-07
PMCID:
PMC2293177
AbstractArticlePDF–236K
8.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
AbstractArticlePDF–1.0M
9.
Role of 16S ribosomal RNA methylations in translation initiation in Escherichia coli
Gautam Das, Dinesh Kumar Thotala, Suman Kapoor, Sheelarani Karunanithi, Suman S Thakur, N Sadananda Singh, Umesh Varshney
EMBO J. 2008 Mar 19; 27(6): 840–851. Published online 2008 Feb 21. doi: 10.1038/emboj.2008.20
PMCID:
PMC2274930
AbstractArticlePDF–1.1M
10.
Dissection of 16S rRNA Methyltransferase (KsgA) Function in Escherichia coli
Koichi Inoue, Soumit Basu, Masayori Inouye
J Bacteriol. 2007 Dec; 189(23): 8510–8518. Published online 2007 Sep 21. doi: 10.1128/JB.01259-07
PMCID:
PMC2168933
AbstractArticlePDF–350K
11.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
12.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
13.
Alteration of Ribosomal Protein S4 by Mutation Linked to Kasugamycin-Resistance in Escherichia coli
Robert A. Zimmermann, Yoshiko Ikeya, P. Frederick Sparling
Proc Natl Acad Sci U S A. 1973 Jan; 70(1): 71–75. doi: 10.1073/pnas.70.1.71
PMCID:
PMC433186
SummaryPage BrowsePDF–1.0M
14.
Systematic sequencing of the Escherichia coli genome: analysis of the 0-2.4 min region.
T Yura, H Mori, H Nagai, T Nagata, A Ishihama, N Fujita, K Isono, K Mizobuchi, A Nakata
Nucleic Acids Res. 1992 Jul 11; 20(13): 3305–3308. doi: 10.1093/nar/20.13.3305
PMCID:
PMC312481
SummaryPage BrowsePDF–957K
15.
surA, an Escherichia coli gene essential for survival in stationary phase.
A Tormo, M Almirón, R Kolter
J Bacteriol. 1990 Aug; 172(8): 4339–4347. doi: 10.1128/jb.172.8.4339-4347.1990
PMCID:
PMC213259
SummaryPage BrowsePDF–1.6M
16.
Overlap between pdxA and ksgA in the complex pdxA-ksgA-apaG-apaH operon of Escherichia coli K-12.
B B Roa, D M Connolly, M E Winkler
J Bacteriol. 1989 Sep; 171(9): 4767–4777. doi: 10.1128/jb.171.9.4767-4777.1989
PMCID:
PMC210278
SummaryPage BrowsePDF–2.3M
17.
Autogenous regulation of the Escherichia coli ksgA gene at the level of translation.
B van Gemen, J Twisk, P H van Knippenberg
J Bacteriol. 1989 Jul; 171(7): 4002–4008. doi: 10.1128/jb.171.7.4002-4008.1989
PMCID:
PMC210154
SummaryPage BrowsePDF–1.6M
18.
Positive Growth Rate-Dependent Regulation of the pdxA, ksgA, and pdxB Genes of Escherichia coli K-12
Andrew J. Pease, Benjamin R. Roa, Wen Luo, Malcolm E. Winkler
J Bacteriol. 2002 Mar; 184(5): 1359–1369. doi: 10.1128/JB.184.5.1359-1369.2002
PMCID:
PMC134838
AbstractArticlePDF–667K
19.
The Gene for 16S rRNA Methyltransferase (ksgA) Functions as a Multicopy Suppressor for a Cold-Sensitive Mutant of Era, an Essential RAS-Like GTP-Binding Protein in Escherichia coli
Qing Lu, Masayori Inouye
J Bacteriol. 1998 Oct; 180(19): 5243–5246. doi: 10.1128/jb.180.19.5243-5246.1998
PMCID:
PMC107565
AbstractArticlePDF–1.2M
20.
Comparative genomics and evolution of proteins involved in RNA metabolism
Vivek Anantharaman, Eugene V. Koonin, L. Aravind
Nucleic Acids Res. 2002 Apr 1; 30(7): 1427–1464. doi: 10.1093/nar/30.7.1427
PMCID:
PMC101826
AbstractArticlePDF–2.6M

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