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Items: 1 to 20 of 30

1.
Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification
Fan Liu, Philip Lössl, Richard Scheltema, Rosa Viner, Albert J. R. Heck
Nat Commun. 2017; 8: 15473. Published online 2017 May 19. doi: 10.1038/ncomms15473
PMCID:
PMC5454533
AbstractArticlePDF–1.5M
2.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
AbstractArticlePDF–1.1M
3.
YajL, Prokaryotic Homolog of Parkinsonism-associated Protein DJ-1, Functions as a Covalent Chaperone for Thiol Proteome
Hai-Tuong Le, Valérie Gautier, Fatoum Kthiri, Abderrahim Malki, Nadia Messaoudi, Mouadh Mihoub, Ahmed Landoulsi, Young Jun An, Sun-Shin Cha, Gilbert Richarme
J Biol Chem. 2012 Feb 17; 287(8): 5861–5870. Published online 2011 Dec 7. doi: 10.1074/jbc.M111.299198
PMCID:
PMC3285355
AbstractArticlePDF–1.2M
4.
Aminoacyl Transfer Rate Dictates Choice of Editing Pathway in Threonyl-tRNA Synthetase
Anand Minajigi, Christopher S. Francklyn
J Biol Chem. 2010 Jul 30; 285(31): 23810–23817. Published online 2010 May 26. doi: 10.1074/jbc.M110.105320
PMCID:
PMC2911285
AbstractArticlePDF–1.2M
5.
RNA-assisted catalysis in a protein enzyme: The 2′-hydroxyl of tRNAThr A76 promotes aminoacylation by threonyl-tRNA synthetase
Anand Minajigi, Christopher S. Francklyn
Proc Natl Acad Sci U S A. 2008 Nov 18; 105(46): 17748–17753. Published online 2008 Nov 7. doi: 10.1073/pnas.0804247105
PMCID:
PMC2584683
AbstractArticlePDF–495K
6.
Quality control despite mistranslation caused by an ambiguous genetic code
Benfang Ruan, Sotiria Palioura, Jeffrey Sabina, Laure Marvin-Guy, Sunil Kochhar, Robert A. LaRossa, Dieter Söll
Proc Natl Acad Sci U S A. 2008 Oct 28; 105(43): 16502–16507. Published online 2008 Oct 22. doi: 10.1073/pnas.0809179105
PMCID:
PMC2575449
AbstractArticlePDF–983K
7.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
AbstractArticlePDF–1.0M
8.
N-terminal domains of native multidomain proteins have the potential to assist de novo folding of their downstream domains in vivo by acting as solubility enhancers
Chul Woo Kim, Kyoung Sim Han, Ki-Sun Ryu, Byung Hee Kim, Kyun-Hwan Kim, Seong Il Choi, Baik L. Seong
Protein Sci. 2007 Apr; 16(4): 635–643. doi: 10.1110/ps.062330907
PMCID:
PMC2203336
AbstractArticlePDF–629K
9.
Mutations in Residues Involved in Zinc Binding in the Catalytic Site of Escherichia coli Threonyl-tRNA Synthetase Confer a Dominant Lethal Phenotype
Joël Caillet, Monique Graffe, Flore Eyermann, Pascale Romby, Mathias Springer
J Bacteriol. 2007 Oct; 189(19): 6839–6848. Published online 2007 Jul 20. doi: 10.1128/JB.00439-07
PMCID:
PMC2045194
AbstractArticlePDF–419K
10.
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori
Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050
PMCID:
PMC1681482
AbstractArticlePDF–400K
11.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
12.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
13.
The expression of E.coli threonyl-tRNA synthetase is regulated at the translational level by symmetrical operator-repressor interactions.
P Romby, J Caillet, C Ebel, C Sacerdot, M Graffe, F Eyermann, C Brunel, H Moine, C Ehresmann, B Ehresmann, M Springer
EMBO J. 1996 Nov 1; 15(21): 5976–5987.
PMCID:
PMC452390
SummaryPage BrowsePDF–2.4M
14.
tRNA-like structures and gene regulation at the translational level: a case of molecular mimicry in Escherichia coli.
M Springer, M Graffe, J Dondon, M Grunberg-Manago
EMBO J. 1989 Aug; 8(8): 2417–2424. doi: 10.1002/j.1460-2075.1989.tb08372.x
PMCID:
PMC401186
SummaryPage BrowsePDF–1.5M
15.
Structural and transcriptional evidence for related thrS and infC expression.
J F Mayaux, G Fayat, M Fromant, M Springer, M Grunberg-Manago, S Blanquet
Proc Natl Acad Sci U S A. 1983 Oct; 80(20): 6152–6156. doi: 10.1073/pnas.80.20.6152
PMCID:
PMC390161
SummaryPage BrowsePDF–1.3M
16.
Molecular mimicry in translational control of E. coli threonyl-tRNA synthetase gene. Competitive inhibition in tRNA aminoacylation and operator-repressor recognition switch using tRNA identity rules.
P Romby, C Brunel, J Caillet, M Springer, M Grunberg-Manago, E Westhof, C Ehresmann, B Ehresmann
Nucleic Acids Res. 1992 Nov 11; 20(21): 5633–5640. doi: 10.1093/nar/20.21.5633
PMCID:
PMC334396
SummaryPage BrowsePDF–2.1M
17.
An anticodon change switches the identity of E. coli tRNA(mMet) from methionine to threonine.
L H Schulman, H Pelka
Nucleic Acids Res. 1990 Jan 25; 18(2): 285–289. doi: 10.1093/nar/18.2.285
PMCID:
PMC330265
SummaryPage BrowsePDF–787K
18.
Sequence, structural and evolutionary relationships between class 2 aminoacyl-tRNA synthetases.
S Cusack, M Härtlein, R Leberman
Nucleic Acids Res. 1991 Jul 11; 19(13): 3489–3498. doi: 10.1093/nar/19.13.3489
PMCID:
PMC328370
SummaryPage BrowsePDF–2.3M
19.
Genetic definition of the translational operator of the threonine-tRNA ligase gene in Escherichia coli.
M Springer, M Graffe, J S Butler, M Grunberg-Manago
Proc Natl Acad Sci U S A. 1986 Jun; 83(12): 4384–4388. doi: 10.1073/pnas.83.12.4384
PMCID:
PMC323737
SummaryPage BrowsePDF–1.1M
20.
Genetic analysis of mutations causing borrelidin resistance by overproduction of threonyl-transfer ribonucleic acid synthetase.
J Fröhler, A Rechenmacher, J Thomale, G Nass, A Böck
J Bacteriol. 1980 Sep; 143(3): 1135–1141. doi: 10.1128/jb.143.3.1135-1141.1980
PMCID:
PMC294463
SummaryPage BrowsePDF–1.4M

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