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Items: 1 to 20 of 273

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
ISW1a modulates cohesin distribution in centromeric and pericentromeric regions
Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz
Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612
PMCID:
PMC10516642
AbstractArticlePDF–2.8M
4.
Structural convergence endows nuclear transport receptor Kap114p with a transcriptional repressor function toward TATA-binding protein
Chung-Chi Liao, Yi-Sen Wang, Wen-Chieh Pi, Chun-Hsiung Wang, Yi-Min Wu, Wei-Yi Chen, Kuo-Chiang Hsia
Nat Commun. 2023; 14: 5518. Published online 2023 Sep 8. doi: 10.1038/s41467-023-41206-9
PMCID:
PMC10491584
AbstractArticlePDF–5.8M
5.
The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions
Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman
Mol Cell. Author manuscript; available in PMC 2024 Jun 15.
Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021
PMCID:
PMC10297700
AbstractArticlePDF–2.0M
6.
Dynamic epistasis analysis reveals how chromatin remodeling regulates transcriptional bursting
Ineke Brouwer, Emma Kerklingh, Fred van Leeuwen, Tineke L. Lenstra
Nat Struct Mol Biol. 2023; 30(5): 692–702. Published online 2023 May 1. doi: 10.1038/s41594-023-00981-1
PMCID:
PMC10191856
AbstractArticlePDF–23M
7.
Spt3 and Spt8 Are Involved in the Formation of a Silencing Boundary by Interacting with TATA-Binding Protein
Kazuma Kamata, Takahito Ayano, Masaya Oki
Biomolecules. 2023 Apr; 13(4): 619. Published online 2023 Mar 30. doi: 10.3390/biom13040619
PMCID:
PMC10136053
AbstractArticlePDF–2.6M
8.
A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition
Anastasia Barkova, Indranil Adhya, Christine Conesa, Amna Asif-Laidin, Amandine Bonnet, Elise Rabut, Carine Chagneau, Pascale Lesage, Joël Acker
Mob DNA. 2022; 13: 26. Published online 2022 Nov 18. doi: 10.1186/s13100-022-00284-0
PMCID:
PMC9673352
AbstractArticlePDF–2.6M
9.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
10.
The ubiquitin–proteasome system regulates meiotic chromosome organization
Xiao Yang, Meihui Song, Ying Wang, Taicong Tan, Zhongyu Tian, Binyuan Zhai, Xuan Yang, Yingjin Tan, Yanding Cao, Shaojun Dai, Shunxin Wang, Liangran Zhang
Proc Natl Acad Sci U S A. 2022 Apr 26; 119(17): e2106902119. Published online 2022 Apr 19. doi: 10.1073/pnas.2106902119
PMCID:
PMC9169913
AbstractArticlePDF–2.1M
11.
Transcriptional Inhibition of Genes with Severe Histone H3 Hypoacetylation in the Coding Region
Arnold Kristjuhan, Jane Walker, Noriyuki Suka, Michael Grunstein, Douglas Roberts, Bradley R. Cairns, Jesper Q. Svejstrup
Mol Cell. Author manuscript; available in PMC 2022 Apr 24.
Published in final edited form as: Mol Cell. 2002 Oct; 10(4): 925–933. doi: 10.1016/s1097-2765(02)00647-0
PMCID:
PMC9035295
AbstractArticlePDF–589K
12.
Systems-level effects of allosteric perturbations to a model molecular switch
Tina Perica, Christopher J. P. Mathy, Jiewei Xu, Gwendolyn M. Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme
Nature. Author manuscript; available in PMC 2022 May 1.
Published in final edited form as: Nature. 2021 Nov; 599(7883): 152–157. Published online 2021 Oct 13. doi: 10.1038/s41586-021-03982-6
PMCID:
PMC8571063
AbstractArticlePDF–2.7M
13.
Replication stress inhibits synthesis of histone mRNAs in yeast by removing Spt10p and Spt21p from the histone promoters
Madhura Bhagwat, Shreya Nagar, Pritpal Kaur, Riddhi Mehta, Ivana Vancurova, Ales Vancura
J Biol Chem. 2021 Nov; 297(5): 101246. Published online 2021 Sep 25. doi: 10.1016/j.jbc.2021.101246
PMCID:
PMC8551654
AbstractArticlePDF–3.5M
14.
The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions
Rajaraman Gopalakrishnan, Fred Winston
J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205
PMCID:
PMC8511950
AbstractArticlePDF–3.1M
15.
Connection of core and tail Mediator modules restrains transcription from TFIID-dependent promoters
Moustafa M. Saleh, Célia Jeronimo, François Robert, Gabriel E. Zentner
PLoS Genet. 2021 Aug; 17(8): e1009529. Published online 2021 Aug 12. doi: 10.1371/journal.pgen.1009529
PMCID:
PMC8384189
AbstractArticlePDF–1.8M
16.
Structures and implications of TBP–nucleosome complexes
Haibo Wang, Le Xiong, Patrick Cramer
Proc Natl Acad Sci U S A. 2021 Jul 27; 118(30): e2108859118. Published online 2021 Jul 23. doi: 10.1073/pnas.2108859118
PMCID:
PMC8325331
AbstractArticlePDF–2.1M
17.
Stress tolerance enhancement via SPT15 base editing in Saccharomyces cerevisiae
Yanfang Liu, Yuping Lin, Yufeng Guo, Fengli Wu, Yuanyuan Zhang, Xianni Qi, Zhen Wang, Qinhong Wang
Biotechnol Biofuels. 2021; 14: 155. Published online 2021 Jul 6. doi: 10.1186/s13068-021-02005-w
PMCID:
PMC8259078
AbstractArticlePDF–3.3M
18.
FACT interacts with Set3 HDAC and fine-tunes GAL1 transcription in response to environmental stimulation
He Leng, Shaofeng Liu, Yang Lei, Yuantao Tang, Shijia Gu, Jiazhi Hu, She Chen, Jianxun Feng, Qing Li
Nucleic Acids Res. 2021 Jun 4; 49(10): 5502–5519. Published online 2021 May 8. doi: 10.1093/nar/gkab312
PMCID:
PMC8191775
AbstractArticlePDF–3.0M
19.
SUMOylation stabilizes sister kinetochore biorientation to allow timely anaphase
Xue Bessie Su, Menglu Wang, Claudia Schaffner, Olga O. Nerusheva, Dean Clift, Christos Spanos, David A. Kelly, Michael Tatham, Andreas Wallek, Yehui Wu, Juri Rappsilber, A. Arockia Jeyaprakash, Zuzana Storchova, Ronald T. Hay, Adèle L. Marston
J Cell Biol. 2021 Jul 5; 220(7): e202005130. Published online 2021 Apr 30. doi: 10.1083/jcb.202005130
PMCID:
PMC8094117
AbstractArticlePDF–8.1M
20.
A high-resolution protein architecture of the budding yeast genome
Matthew J. Rossi, Prashant K. Kuntala, William K.M. Lai, Naomi Yamada, Nitika Badjatia, Chitvan Mittal, Guray Kuzu, Kylie Bocklund, Nina P. Farrell, Thomas R. Blanda, Joshua D. Mairose, Ann V. Basting, Katelyn S. Mistretta, David J. Rocco, Emily S. Perkinson, Gretta D. Kellogg, Shaun Mahony, B. Franklin Pugh
Nature. Author manuscript; available in PMC 2021 Sep 10.
Published in final edited form as: Nature. 2021 Apr; 592(7853): 309–314. Published online 2021 Mar 10. doi: 10.1038/s41586-021-03314-8
PMCID:
PMC8035251
AbstractArticlePDF–7.8M

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