PMC Links for GEO Profiles (Select 10155410) - PMC

Select item 92098111.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 86940402.

Phospholipid flippases and Sfk1 are essential for the retention of ergosterol in the plasma membrane

Takuma Kishimoto, Tetsuo Mioka, Eriko Itoh, David E. Williams, Raymond J. Andersen, Kazuma Tanaka

Mol Biol Cell. 2021 Jul 15; 32(15): 1374–1392. doi: 10.1091/mbc.E20-11-0699

PMCID:: PMC8694040

Abstract Article PDF–4.3M

Select item 76724343.

Mechanisms coordinating ribosomal protein gene transcription in response to stress

Sevil Zencir, Daniel Dilg, Maria Paula Rueda, David Shore, Benjamin Albert

Nucleic Acids Res. 2020 Nov 18; 48(20): 11408–11420. Published online 2020 Oct 21. doi: 10.1093/nar/gkaa852

PMCID:: PMC7672434

Abstract Article PDF–3.6M

Select item 56618854.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 56002545.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 55769076.

DNA damage regulates direct association of TOR kinase with the RNA polymerase II–transcribed HMO1 gene

Arvind Panday, Ashish Gupta, Kavitha Srinivasa, Lijuan Xiao, Mathew D. Smith, Anne Grove

Mol Biol Cell. 2017 Sep 1; 28(18): 2449–2459. doi: 10.1091/mbc.E17-01-0024

PMCID:: PMC5576907

Abstract Article PDF–3.6M

Select item 52171077.

Cfs1p, a Novel Membrane Protein in the PQ-Loop Family, Is Involved in Phospholipid Flippase Functions in Yeast

Takaharu Yamamoto, Konomi Fujimura-Kamada, Eno Shioji, Risa Suzuki, Kazuma Tanaka

G3 (Bethesda) 2017 Jan; 7(1): 179–192. Published online 2016 Nov 8. doi: 10.1534/g3.116.035238

PMCID:: PMC5217107

Abstract Article PDF–3.3M

Select item 43638228.

Inositol Depletion Restores Vesicle Transport in Yeast Phospholipid Flippase Mutants

Kanako Yamagami, Takaharu Yamamoto, Shota Sakai, Tetsuo Mioka, Takamitsu Sano, Yasuyuki Igarashi, Kazuma Tanaka

PLoS One. 2015; 10(3): e0120108. Published online 2015 Mar 17. doi: 10.1371/journal.pone.0120108

PMCID:: PMC4363822

Abstract Article PDF–1.8M

Select item 42342699.

Asymmetric distribution of phosphatidylserine is generated in the absence of phospholipid flippases in Saccharomyces cerevisiae

Tetsuo Mioka, Konomi Fujimura-Kamada, Kazuma Tanaka

Microbiologyopen. 2014 Oct; 3(5): 803–821. Published online 2014 Sep 13. doi: 10.1002/mbo3.211

PMCID:: PMC4234269

Abstract Article PDF–5.6M

Select item 343630110.

Mapping Functional Interactions in a Heterodimeric Phospholipid Pump

Catheleyne F. Puts, Radhakrishnan Panatala, Hanka Hennrich, Alina Tsareva, Patrick Williamson, Joost C. M. Holthuis

J Biol Chem. 2012 Aug 31; 287(36): 30529–30540. Published online 2012 Jul 12. doi: 10.1074/jbc.M112.371088

PMCID:: PMC3436301

Abstract Article PDF–5.4M

Select item 331716011.

Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs

Sara Sharifpoor, Dewald van Dyk, Michael Costanzo, Anastasia Baryshnikova, Helena Friesen, Alison C. Douglas, Ji-Young Youn, Benjamin VanderSluis, Chad L. Myers, Balázs Papp, Charles Boone, Brenda J. Andrews

Genome Res. 2012 Apr; 22(4): 791–801. doi: 10.1101/gr.129213.111