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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Article PDF–20M

Select item 102333683.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Article PDF–1.2M

Select item 101007504.

Network Analysis Reveals the Molecular Bases of Statin Pleiotropy That Vary with Genetic Background

Cintya E. del Rio Hernandez, Lani J. Campbell, Paul H. Atkinson, Andrew B. Munkacsi

Microbiol Spectr. 2023 Mar-Apr; 11(2): e04148-22. Published online 2023 Mar 22. doi: 10.1128/spectrum.04148-22

PMCID:: PMC10100750

Article PDF–6.1M

Select item 96309865.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Article PDF–2.2M

Select item 92098116.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Article PDF–818K

Select item 86940407.

Phospholipid flippases and Sfk1 are essential for the retention of ergosterol in the plasma membrane

Takuma Kishimoto, Tetsuo Mioka, Eriko Itoh, David E. Williams, Raymond J. Andersen, Kazuma Tanaka

Mol Biol Cell. 2021 Jul 15; 32(15): 1374–1392. doi: 10.1091/mbc.E20-11-0699

PMCID:: PMC8694040

Article PDF–4.3M

Select item 84963278.

A functional genomic screen in Saccharomyces cerevisiae reveals divergent mechanisms of resistance to different alkylphosphocholine chemotherapeutic agents

Jaquelin M Garcia, Michael J Schwabe, Dennis R Voelker, Wayne R Riekhof

G3 (Bethesda) 2021 Oct; 11(10): jkab233. Published online 2021 Aug 10. doi: 10.1093/g3journal/jkab233

PMCID:: PMC8496327

Article PDF–628K

Select item 77733339.

Transport mechanism of P4 ATPase phosphatidylcholine flippases

Lin Bai, Qinglong You, Bhawik K Jain, H Diessel Duan, Amanda Kovach, Todd R Graham, Huilin Li

eLife. 2020; 9: e62163. Published online 2020 Dec 15. doi: 10.7554/eLife.62163

PMCID:: PMC7773333

Article PDF–6.6M

Select item 750740210.

Systematic analysis of bypass suppression of essential genes

Jolanda van Leeuwen, Carles Pons, Guihong Tan, Zi Yang Wang, Jing Hou, Jochen Weile, Marinella Gebbia, Wendy Liang, Ermira Shuteriqi, Zhijian Li, Maykel Lopes, Matej Ušaj, Andreia Dos Santos Lopes, Natascha van Lieshout, Chad L Myers, Frederick P Roth, Patrick Aloy, Brenda J Andrews, Charles Boone

Mol Syst Biol. 2020 Sep; 16(9): e9828. Published online 2020 Sep 17. doi: 10.15252/msb.20209828

PMCID:: PMC7507402

Article PDF–1.9M

Select item 738517811.

An optogenetic system to control membrane phospholipid asymmetry through flippase activation in budding yeast

Tomomi Suzuki, Tetsuo Mioka, Kazuma Tanaka, Akira Nagatani

Sci Rep. 2020; 10: 12474. Published online 2020 Jul 27. doi: 10.1038/s41598-020-69459-0

PMCID:: PMC7385178

Article PDF–8.2M

Select item 732543512.

A genetic interaction map centered on cohesin reveals auxiliary factors involved in sister chromatid cohesion in S. cerevisiae

Su Ming Sun, Amandine Batté, Mireille Elmer, Sophie C. van der Horst, Tibor van Welsem, Gordon Bean, Trey Ideker, Fred van Leeuwen, Haico van Attikum

J Cell Sci. 2020 May 15; 133(10): jcs237628. Published online 2020 May 22. doi: 10.1242/jcs.237628

PMCID:: PMC7325435

Article

Select item 700308413.

Identification of the Genetic Requirements for Zinc Tolerance and Toxicity in Saccharomyces cerevisiae

Yun-ying Zhao, Chun-lei Cao, Ying-li Liu, Jing Wang, Jie Li, Shi-yun Li, Yu Deng

G3 (Bethesda) 2020 Feb; 10(2): 479–488. Published online 2019 Dec 13. doi: 10.1534/g3.119.400933

PMCID:: PMC7003084

Article PDF–2.1M

Select item 649517514.

The PQ-loop protein Any1 segregates Drs2 and Neo1 functions required for viability and plasma membrane phospholipid asymmetry

Mehmet Takar, Yannan Huang, Todd R. Graham

J Lipid Res. 2019 May; 60(5): 1032–1042. Published online 2019 Mar 1. doi: 10.1194/jlr.M093526

PMCID:: PMC6495175

Article PDF–1.8M

Select item 637407715.

A systematic approach to identify recycling endocytic cargo depending on the GARP complex

Sebastian Eising, Lisa Thiele, Florian Fröhlich

eLife. 2019; 8: e42837. Published online 2019 Jan 29. doi: 10.7554/eLife.42837

PMCID:: PMC6374077

Article PDF–2.3M

Select item 634717016.

Effect of Sec61 interaction with Mpd1 on endoplasmic reticulum-associated degradation

Fabio Pereira, Mandy Rettel, Frank Stein, Mikhail M. Savitski, Ian Collinson, Karin Römisch

PLoS One. 2019; 14(1): e0211180. Published online 2019 Jan 25. doi: 10.1371/journal.pone.0211180

PMCID:: PMC6347170

Article PDF–16M

Select item 634577917.

Hypoculoside, a sphingoid base-like compound from Acremonium disrupts the membrane integrity of yeast cells

Mohammad Alfatah, Jin Huei Wong, Choy Eng Nge, Kiat Whye Kong, Kia Ngee Low, Chung Yan Leong, Sharon Crasta, Madhaiyan Munusamy, Amanda Mun Leng Chang, Shawn Hoon, Siew Bee Ng, Yoganathan Kanagasundaram, Prakash Arumugam

Sci Rep. 2019; 9: 710. Published online 2019 Jan 24. doi: 10.1038/s41598-018-35979-z

PMCID:: PMC6345779

Article PDF–2.2M

Select item 634107318.

The metacaspase Yca1 maintains proteostasis through multiple interactions with the ubiquitin system

Amit Shrestha, Steve Brunette, William Lloyd Stanford, Lynn Arthur Megeney

Cell Discov. 2019; 5: 6. Published online 2019 Jan 22. doi: 10.1038/s41421-018-0071-9

PMCID:: PMC6341073

Article PDF–1.7M

Select item 598386119.

Endoplasmic reticulum-plasma membrane contact sites integrate sterol and phospholipid regulation

Evan Quon, Yves Y. Sere, Neha Chauhan, Jesper Johansen, David P. Sullivan, Jeremy S. Dittman, William J. Rice, Robin B. Chan, Gilbert Di Paolo, Christopher T. Beh, Anant K. Menon

PLoS Biol. 2018 May; 16(5): e2003864. Published online 2018 May 21. doi: 10.1371/journal.pbio.2003864

PMCID:: PMC5983861

Article PDF–8.8M

Select item 593507020.

Phospholipid flippases and Sfk1p, a novel regulator of phospholipid asymmetry, contribute to low permeability of the plasma membrane

Tetsuo Mioka, Konomi Fujimura-Kamada, Nahiro Mizugaki, Takuma Kishimoto, Takamitsu Sano, Hitoshi Nunome, David E. Williams, Raymond J. Andersen, Kazuma Tanaka

Mol Biol Cell. 2018 May 15; 29(10): 1203–1218. doi: 10.1091/mbc.E17-04-0217