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Select item 107001381.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 99845322.

Genetic requirements for repair of lesions caused by single genomic ribonucleotides in S phase

Natalie Schindler, Matthias Tonn, Vanessa Kellner, Jia Jun Fung, Arianna Lockhart, Olga Vydzhak, Thomas Juretschke, Stefanie Möckel, Petra Beli, Anton Khmelinskii, Brian Luke

Nat Commun. 2023; 14: 1227. Published online 2023 Mar 3. doi: 10.1038/s41467-023-36866-6

PMCID:: PMC9984532

Abstract Article PDF–3.0M

Select item 98291803.

The RNA export and RNA decay complexes THO and TRAMP prevent transcription-replication conflicts, DNA breaks, and CAG repeat contractions

Rebecca E. Brown, Xiaofeng A. Su, Stacey Fair, Katherine Wu, Lauren Verra, Robyn Jong, Kristin Andrykovich, Catherine H. Freudenreich

PLoS Biol. 2022 Dec; 20(12): e3001940. Published online 2022 Dec 27. doi: 10.1371/journal.pbio.3001940

PMCID:: PMC9829180

Abstract Article PDF–2.5M

Select item 97328154.

Molecular basis for processing of topoisomerase 1-triggered DNA damage by Apn2/APE2

Jessica S. Williams, Jessica L. Wojtaszek, Denise C. Appel, Juno Krahn, Bret D. Wallace, Evan Walsh, Thomas A. Kunkel, R. Scott Williams

Cell Rep. Author manuscript; available in PMC 2022 Dec 9.

Published in final edited form as: Cell Rep. 2022 Oct 4; 41(1): 111448. doi: 10.1016/j.celrep.2022.111448

PMCID:: PMC9732815

Abstract Article PDF–2.5M

Select item 92625875.

Ribodysgenesis: sudden genome instability in the yeast Saccharomyces cerevisiae arising from RNase H2 cleavage at genomic-embedded ribonucleotides

Yang Sui, Anastasiya Epstein, Margaret Dominska, Dao-Qiong Zheng, Thomas D Petes, Hannah L Klein

Nucleic Acids Res. 2022 Jul 8; 50(12): 6890–6902. Published online 2022 Jun 24. doi: 10.1093/nar/gkac536

PMCID:: PMC9262587

Abstract Article PDF–1.9M

Select item 92098116.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 84212047.

Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast

Laurence Decourty, Christophe Malabat, Emmanuel Frachon, Alain Jacquier, Cosmin Saveanu

Nucleic Acids Res. 2021 Sep 7; 49(15): 8535–8555. Published online 2021 Aug 6. doi: 10.1093/nar/gkab680

PMCID:: PMC8421204

Abstract Article PDF–2.9M

Select item 83806748.

A role for Rad5 in ribonucleoside monophosphate (rNMP) tolerance

Menattallah Elserafy, Iman El-Shiekh, Dalia Fleifel, Reham Atteya, Abdelrahman AlOkda, Mohamed M Abdrabbou, Mostafa Nasr, Sherif F El-Khamisy

Life Sci Alliance. 2021 Oct; 4(10): e202000966. Published online 2021 Aug 18. doi: 10.26508/lsa.202000966

PMCID:: PMC8380674

Abstract Article PDF–3.6M

Select item 82894089.

DNA-RNA hybrids at DSBs interfere with repair by homologous recombination

Pedro Ortega, José Antonio Mérida-Cerro, Ana G Rondón, Belén Gómez-González, Andrés Aguilera

eLife. 2021; 10: e69881. Published online 2021 Jul 8. doi: 10.7554/eLife.69881

PMCID:: PMC8289408

Abstract Article PDF–4.6M

Select item 802119810.

Genome-wide analysis of DNA replication and DNA double-strand breaks using TrAEL-seq

Neesha Kara, Felix Krueger, Peter Rugg-Gunn, Jonathan Houseley

PLoS Biol. 2021 Mar; 19(3): e3000886. Published online 2021 Mar 24. doi: 10.1371/journal.pbio.3000886

PMCID:: PMC8021198

Abstract Article PDF–3.2M

Select item 776823911.

Yeast Nucleolin Nsr1 Impedes Replication and Elevates Genome Instability at an Actively Transcribed Guanine-Rich G4 DNA-Forming Sequence

Shivani Singh, Alexandra Berroyer, Minseon Kim, Nayun Kim

Genetics. 2020 Dec; 216(4): 1023–1037. Published online 2020 Oct 26. doi: 10.1534/genetics.120.303736

PMCID:: PMC7768239

Abstract Article PDF–1.4M

Select item 771875112.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 752471113.

RNA-cDNA hybrids mediate transposition via different mechanisms

Lauren A. Todd, Amanda C. Hall, Violena Pietrobon, Janet N. Y. Chan, Guillaume Laflamme, Karim Mekhail

Sci Rep. 2020; 10: 16034. Published online 2020 Sep 29. doi: 10.1038/s41598-020-73018-y

PMCID:: PMC7524711

Abstract Article PDF–4.2M

Select item 750254514.

Genetic characterization of three distinct mechanisms supporting RNA-driven DNA repair and modification reveals major role of DNA polymerase ζ

Chance Meers, Havva Keskin, Gabor Banyai, Olga Mazina, Taehwan Yang, Alli L. Gombolay, Kuntal Mukherjee, Efiyenia I. Kaparos, Gary Newnam, Alexander Mazin, Francesca Storici

Mol Cell. Author manuscript; available in PMC 2021 Sep 17.

Published in final edited form as: Mol Cell. 2020 Sep 17; 79(6): 1037–1050.e5. Published online 2020 Sep 2. doi: 10.1016/j.molcel.2020.08.011