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Items: 1 to 20 of 101

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
ISW1a modulates cohesin distribution in centromeric and pericentromeric regions
Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz
Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612
PMCID:
PMC10516642
AbstractArticlePDF–2.8M
4.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
5.
SWR1 chromatin remodeling complex prevents mitotic slippage during spindle position checkpoint arrest
Ayse Koca Caydasi, Anton Khmelinskii, Zoulfia Darieva, Bahtiyar Kurtulmus, Michael Knop, Gislene Pereira
Mol Biol Cell. 2023 Feb 1; 34(2): ar11. Published online 2023 Jan 13. doi: 10.1091/mbc.E20-03-0179
PMCID:
PMC9930528
AbstractArticlePDF–8.4M
6.
Structure of the NuA4 histone acetyltransferase complex
Liting Ji, Lixia Zhao, Ke Xu, Huihan Gao, Yang Zhou, Roger D. Kornberg, Heqiao Zhang
Proc Natl Acad Sci U S A. 2022 Nov 29; 119(48): e2214313119. Published online 2022 Nov 22. doi: 10.1073/pnas.2214313119
PMCID:
PMC9860254
AbstractArticlePDF–3.6M
7.
Structure and flexibility of the yeast NuA4 histone acetyltransferase complex
Stefan A Zukin, Matthew R Marunde, Irina K Popova, Katarzyna M Soczek, Eva Nogales, Avinash B Patel
eLife. 2022; 11: e81400. Published online 2022 Oct 20. doi: 10.7554/eLife.81400
PMCID:
PMC9643008
AbstractArticlePDF–12M
8.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
9.
ATP binding facilitates target search of SWR1 chromatin remodeler by promoting one-dimensional diffusion on DNA
Claudia C Carcamo, Matthew F Poyton, Anand Ranjan, Giho Park, Robert K Louder, Xinyu A Feng, Jee Min Kim, Thuc Dzu, Carl Wu, Taekjip Ha
eLife. 2022; 11: e77352. Published online 2022 Jul 25. doi: 10.7554/eLife.77352
PMCID:
PMC9365391
AbstractArticlePDF–9.0M
10.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
11.
Recognition of acetylated histone by Yaf9 regulates metabolic cycling of transcription initiation and chromatin regulatory factors
Jibo Zhang, Aakanksha Gundu, Brian D. Strahl
Genes Dev. 2021 Dec 1; 35(23-24): 1678–1692. doi: 10.1101/gad.348904.121
PMCID:
PMC8653784
AbstractArticlePDF–8.6M
12.
A genome-wide portrait of pervasive drug contaminants
Joseph Uche Ogbede, Guri Giaever, Corey Nislow
Sci Rep. 2021; 11: 12487. Published online 2021 Jun 14. doi: 10.1038/s41598-021-91792-1
PMCID:
PMC8203678
AbstractArticlePDF–3.7M
13.
Interaction of replication factor Sld3 and histone acetyl transferase Esa1 alleviates gene silencing and promotes the activation of late and dormant replication origins
Seiji Tanaka
Genetics. 2021 Jan; 217(1): iyaa001. Published online 2020 Nov 11. doi: 10.1093/genetics/iyaa001
PMCID:
PMC8045687
AbstractArticlePDF–873K
14.
Dinucleosome specificity and allosteric switch of the ISW1a ATP-dependent chromatin remodeler in transcription regulation
Saurabh K. Bhardwaj, Solomon G. Hailu, Lola Olufemi, Sandipan Brahma, Soumyadipta Kundu, Swetansu K. Hota, Jim Persinger, Blaine Bartholomew
Nat Commun. 2020; 11: 5913. Published online 2020 Nov 20. doi: 10.1038/s41467-020-19700-1
PMCID:
PMC7680125
AbstractArticlePDF–4.1M
15.
RNA-binding and prion domains: the Yin and Yang of phase separation
Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia
Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681
PMCID:
PMC7515694
AbstractArticlePDF–3.1M
16.
Taf14 is required for the stabilization of transcription pre-initiation complex in Saccharomyces cerevisiae
Kadri Peil, Henel Jürgens, Johanna Luige, Kersti Kristjuhan, Arnold Kristjuhan
Epigenetics Chromatin. 2020; 13: 24. Published online 2020 May 27. doi: 10.1186/s13072-020-00347-7
PMCID:
PMC7254723
AbstractArticlePDF–2.3M
17.
Extranuclear Structural Components that Mediate Dynamic Chromosome Movements in Yeast Meiosis
Chih-Ying Lee, Carlos Gaston Bisig, Michael M. Conrad, Yanina Ditamo, Luciana Previato, Michael E. Dresser, Roberto J. Pezza
Curr Biol. Author manuscript; available in PMC 2021 Apr 6.
Published in final edited form as: Curr Biol. 2020 Apr 6; 30(7): 1207–1216.e4. Published online 2020 Feb 13. doi: 10.1016/j.cub.2020.01.054
PMCID:
PMC7181386
AbstractArticlePDF–1.1M
18.
Thermosensitive Nucleosome Editing Reveals the Role of DNA Sequence in Targeted Histone Variant Deposition
Lu Sun, Leonidas Pierrakeas, Tailai Li, Ed Luk
Cell Rep. Author manuscript; available in PMC 2020 Feb 25.
Published in final edited form as: Cell Rep. 2020 Jan 7; 30(1): 257–268.e5. doi: 10.1016/j.celrep.2019.12.006
PMCID:
PMC7041490
AbstractArticlePDF–2.4M
19.
Slx5/Slx8‐dependent ubiquitin hotspots on chromatin contribute to stress tolerance
Markus Höpfler, Maximilian J Kern, Tobias Straub, Roman Prytuliak, Bianca H Habermann, Boris Pfander, Stefan Jentsch
EMBO J. 2019 Jun 3; 38(11): e100368. Published online 2019 Apr 23. doi: 10.15252/embj.2018100368
PMCID:
PMC6545562
AbstractArticlePDF–2.3M
20.
Systematic Analysis of Complex Genetic Interactions
Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers
Science. Author manuscript; available in PMC 2018 Nov 4.
Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729
PMCID:
PMC6215713
AbstractArticlePDF–1.9M

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