PMC Links for GEO Profiles (Select 104124759) - PMC

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Items: 16

Select item 57262691.

IspG Converts an Epoxide Substrate Analogue to (E)-4-Hydroxy-3-methylbut-2-enyl Diphosphate: Implications for IspG Catalysis in Isoprenoid Biosynthesis

Rodney L. Nyland, II, Youli Xiao, Pinghua Liu, Caren L. Freel Meyers

J Am Chem Soc. Author manuscript; available in PMC 2017 Dec 12.

Published in final edited form as: J Am Chem Soc. 2009 Dec 16; 131(49): 17734–17735. doi: 10.1021/ja907470n

PMCID:: PMC5726269

Abstract Article PDF–775K

Select item 41238552.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 28951013.

Organometallic mechanism of action and inhibition of the 4Fe-4S isoprenoid biosynthesis protein GcpE (IspG)

Weixue Wang, Jikun Li, Ke Wang, Cancan Huang, Yong Zhang, Eric Oldfield

Proc Natl Acad Sci U S A. 2010 Jun 22; 107(25): 11189–11193. Published online 2010 Jun 7. doi: 10.1073/pnas.1000264107

PMCID:: PMC2895101

Abstract Article PDF–1.1M

Select item 22921774.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 19594325.

ErpA, an iron–sulfur (Fe–S) protein of the A-type essential for respiratory metabolism in Escherichia coli

Laurent Loiseau, Catherine Gerez, Martijn Bekker, Sandrine Ollagnier-de Choudens, Béatrice Py, Yannis Sanakis, Joost Teixeira de Mattos, Marc Fontecave, Frédéric Barras

Proc Natl Acad Sci U S A. 2007 Aug 21; 104(34): 13626–13631. Published online 2007 Aug 14. doi: 10.1073/pnas.0705829104

PMCID:: PMC1959432

Abstract Article PDF–358K

Select item 16814826.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 16814817.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 14570528.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 13252009.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 38778910.

Conditional Lethal Amber Mutations in Essential Escherichia coli Genes

Christopher D. Herring, Frederick R. Blattner

J Bacteriol. 2004 May; 186(9): 2673–2681. doi: 10.1128/JB.186.9.2673-2681.2004

Correction in:: J Bacteriol. 2004 Dec; 186(24): 8547.

PMCID:: PMC387789

Abstract Article PDF–650K

Select item 27556111.

RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

Jörg Vogel, Verena Bartels, Thean Hock Tang, Gennady Churakov, Jacoba G. Slagter-Jäger, Alexander Hüttenhofer, E. Gerhart H. Wagner

Nucleic Acids Res. 2003 Nov 15; 31(22): 6435–6443. doi: 10.1093/nar/gkg867

PMCID:: PMC275561

Abstract Article PDF–258K

Select item 17896312.

aarC, an essential gene involved in density-dependent regulation of the 2'-N-acetyltransferase in Providencia stuartii.

P N Rather, K A Solinsky, M R Paradise, M M Parojcic

J Bacteriol. 1997 Apr; 179(7): 2267–2273. doi: 10.1128/jb.179.7.2267-2273.1997

PMCID:: PMC178963

Summary PDF–357K

Select item 14987613.

The deoxyxylulose phosphate pathway of isoprenoid biosynthesis: Studies on the mechanisms of the reactions catalyzed by IspG and IspH protein

Felix Rohdich, Ferdinand Zepeck, Petra Adam, Stefan Hecht, Johannes Kaiser, Ralf Laupitz, Tobias Gräwert, Sabine Amslinger, Wolfgang Eisenreich, Adelbert Bacher, Duilio Arigoni

Proc Natl Acad Sci U S A. 2003 Feb 18; 100(4): 1586–1591. Published online 2003 Feb 5. doi: 10.1073/pnas.0337742100