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Select item 74012921.

Alterations in the ribosomal protein bL12 of E. coli affecting the initiation, elongation and termination of protein synthesis.

Adam D. Younkin, Steven T Gregory, Michael O’Connor

Biochimie. Author manuscript; available in PMC 2021 Aug 1.

Published in final edited form as: Biochimie. 2020 Aug; 175: 173–180. Published online 2020 Jun 20. doi: 10.1016/j.biochi.2020.06.006

PMCID:: PMC7401292

Article PDF–762K

Select item 59391112.

Complementary charge-based interaction between the ribosomal-stalk protein L7/12 and IF2 is the key to rapid subunit association

Xueliang Ge, Chandra Sekhar Mandava, Christoffer Lind, Johan Åqvist, Suparna Sanyal

Proc Natl Acad Sci U S A. 2018 May 1; 115(18): 4649–4654. Published online 2018 Apr 23. doi: 10.1073/pnas.1802001115

PMCID:: PMC5939111

Article PDF–1.9M

Select item 55682463.

Ribosomal Protein L7/L12 is Required for GTPase Translation Factors EF-G, RF3 and IF2 to Bind in their GTP State to 70S Ribosomes

Markus A. Carlson, Bassam G. Haddad, Amanda J. Weis, Colby S. Blackwood, Catherine D. Shelton, Michelle E. Wuerth, Justin D. Walter, P. Clint Spiegel, Jr.

FEBS J. Author manuscript; available in PMC 2017 Aug 23.

Published in final edited form as: FEBS J. 2017 Jun; 284(11): 1631–1643. Published online 2017 Apr 10. doi: 10.1111/febs.14067

PMCID:: PMC5568246

Article PDF–1.6M

Select item 54545334.

Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification

Fan Liu, Philip Lössl, Richard Scheltema, Rosa Viner, Albert J. R. Heck

Nat Commun. 2017; 8: 15473. Published online 2017 May 19. doi: 10.1038/ncomms15473

PMCID:: PMC5454533

Article PDF–1.5M

Select item 41238555.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Article PDF–1.1M

Select item 32853556.

YajL, Prokaryotic Homolog of Parkinsonism-associated Protein DJ-1, Functions as a Covalent Chaperone for Thiol Proteome

Hai-Tuong Le, Valérie Gautier, Fatoum Kthiri, Abderrahim Malki, Nadia Messaoudi, Mouadh Mihoub, Ahmed Landoulsi, Young Jun An, Sun-Shin Cha, Gilbert Richarme

J Biol Chem. 2012 Feb 17; 287(8): 5861–5870. Published online 2011 Dec 7. doi: 10.1074/jbc.M111.299198

PMCID:: PMC3285355

Article PDF–1.2M

Select item 29192097.

Structures of the ribosome in intermediate states of ratcheting

Wen Zhang, Jack Dunkle, Jamie H. D. Cate

Science. Author manuscript; available in PMC 2010 Aug 10.

Published in final edited form as: Science. 2009 Aug 21; 325(5943): 1014–1017. doi: 10.1126/science.1175275

PMCID:: PMC2919209

Article PDF–2.2M

Select item 27786118.

Regulation of the protein-conducting channel by a bound ribosome

James Gumbart, Leonardo G. Trabuco, Eduard Schreiner, Elizabeth Villa, Klaus Schulten

Structure. Author manuscript; available in PMC 2010 Nov 11.

Published in final edited form as: Structure. 2009 Nov 11; 17(11): 1453–1464. doi: 10.1016/j.str.2009.09.010

PMCID:: PMC2778611

Article PDF–3.1M

Select item 26726149.

Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

Pingzhao Hu, Sarath Chandra Janga, Mohan Babu, J. Javier Díaz-Mejía, Gareth Butland, Wenhong Yang, Oxana Pogoutse, Xinghua Guo, Sadhna Phanse, Peter Wong, Shamanta Chandran, Constantine Christopoulos, Anaies Nazarians-Armavil, Negin Karimi Nasseri, Gabriel Musso, Mehrab Ali, Nazila Nazemof, Veronika Eroukova, Ashkan Golshani, Alberto Paccanaro, Jack F Greenblatt, Gabriel Moreno-Hagelsieb, Andrew Emili

PLoS Biol. 2009 Apr; 7(4): e1000096. Published online 2009 Apr 28. doi: 10.1371/journal.pbio.1000096

PMCID:: PMC2672614

Article

Select item 263292310.

A single-step method for purification of active His-tagged ribosomes from a genetically engineered Escherichia coli

Josefine Ederth, Chandra Sekhar Mandava, Santanu Dasgupta, Suparna Sanyal

Nucleic Acids Res. 2009 Feb; 37(2): e15. Published online 2008 Dec 11. doi: 10.1093/nar/gkn992

PMCID:: PMC2632923

Article PDF–4.5M

Select item 229217711.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Article PDF–1.0M

Select item 168148212.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Article PDF–400K

Select item 168148113.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Article PDF–141K

Select item 163532414.

Stability of the ‘L12 stalk’ in ribosomes from mesophilic and (hyper)thermophilic Archaea and Bacteria

D. Shcherbakov, M. Dontsova, M. Tribus, M. Garber, W. Piendl

Nucleic Acids Res. 2006 Nov; 34(20): 5800–5814. Published online 2006 Oct 19. doi: 10.1093/nar/gkl751

PMCID:: PMC1635324

Article PDF–726K

Select item 135632515.

Control of phosphate release from elongation factor G by ribosomal protein L7/12

Andreas Savelsbergh, Dagmar Mohr, Ute Kothe, Wolfgang Wintermeyer, Marina V Rodnina

EMBO J. 2005 Dec 21; 24(24): 4316–4323. Published online 2005 Nov 17. doi: 10.1038/sj.emboj.7600884

PMCID:: PMC1356325

Article PDF–210K

Select item 132520016.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Article PDF–204K

Select item 114357817.

NMR structure and Mg²⁺ binding of an RNA segment that underlies the L7/L12 stalk in the E.coli 50S ribosomal subunit

Qin Zhao, Uma Nagaswamy, Hunjoong Lee, Youlin Xia, Hung-Chung Huang, Xiaolian Gao, George E. Fox

Nucleic Acids Res. 2005; 33(10): 3145–3153. Published online 2005 Jun 6. doi: 10.1093/nar/gki621

PMCID:: PMC1143578

Article PDF–665K

Select item 50372418.

Heteronuclear NMR investigations of dynamic regions of intact Escherichia coli ribosomes

John Christodoulou, Göran Larsson, Paola Fucini, Sean R. Connell, Thelma A. Pertinhez, Charlotte L. Hanson, Christina Redfield, Knud H. Nierhaus, Carol V. Robinson, Jürgen Schleucher, Christopher M. Dobson

Proc Natl Acad Sci U S A. 2004 Jul 27; 101(30): 10949–10954. Published online 2004 Jul 19. doi: 10.1073/pnas.0400928101

PMCID:: PMC503724

Article PDF–550K

Select item 43320319.

Identity of the Ribosomal Proteins Involved in the Interaction with Elongation Factor G

Joseph H. Highland, James W. Bodley, Julian Gordon, Renate Hasenbank, Georg Stöffler

Proc Natl Acad Sci U S A. 1973 Jan; 70(1): 147–150. doi: 10.1073/pnas.70.1.147

PMCID:: PMC433203

Article PDF–709K

Select item 42844420.

Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: Functional implications

Rajendra K. Agrawal, Manjuli R. Sharma, Michael C. Kiel, Go Hirokawa, Timothy M. Booth, Christian M. T. Spahn, Robert A. Grassucci, Akira Kaji, Joachim Frank

Proc Natl Acad Sci U S A. 2004 Jun 15; 101(24): 8900–8905. Published online 2004 Jun 3. doi: 10.1073/pnas.0401904101

PMCID:: PMC428444

Article PDF–656K

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