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Select item 102879571.

RecF protein targeting to postreplication (daughter strand) gaps I: DNA binding by RecF and RecFR

Camille Henry, Neema Mbele, Michael M Cox

Nucleic Acids Res. 2023 Jun 23; 51(11): 5699–5713. Published online 2023 May 1. doi: 10.1093/nar/gkad311

Correction in:: Nucleic Acids Res. 2023 Jun 23; 51(11): 5900.

PMCID:: PMC10287957

Abstract Article PDF–2.0M

Select item 102879302.

RecF protein targeting to post-replication (daughter strand) gaps II: RecF interaction with replisomes

Camille Henry, Gurleen Kaur, Megan E Cherry, Sarah S Henrikus, Nina J Bonde, Nischal Sharma, Hope A Beyer, Elizabeth A Wood, Sindhu Chitteni-Pattu, Antoine M van Oijen, Andrew Robinson, Michael M Cox

Nucleic Acids Res. 2023 Jun 23; 51(11): 5714–5742. Published online 2023 May 1. doi: 10.1093/nar/gkad310

PMCID:: PMC10287930

Abstract Article PDF–2.9M

Select item 87356273.

The rarA gene as part of an expanded RecFOR recombination pathway: Negative epistasis and synthetic lethality with ruvB, recG, and recQ

Kanika Jain, Elizabeth A. Wood, Michael M. Cox

PLoS Genet. 2021 Dec; 17(12): e1009972. Published online 2021 Dec 22. doi: 10.1371/journal.pgen.1009972

PMCID:: PMC8735627

Abstract Article PDF–3.5M

Select item 64510954.

RecFOR epistasis group: RecF and RecO have distinct localizations and functions in Escherichia coli

Sarah S Henrikus, Camille Henry, Harshad Ghodke, Elizabeth A Wood, Neema Mbele, Roopashi Saxena, Upasana Basu, Antoine M van Oijen, Michael M Cox, Andrew Robinson

Nucleic Acids Res. 2019 Apr 8; 47(6): 2946–2965. Published online 2019 Jan 18. doi: 10.1093/nar/gkz003

PMCID:: PMC6451095

Abstract Article PDF–4.5M

Select item 41238555.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 38946586.

The RecF protein antagonizes RecX function via direct interaction

Shelley L. Lusetti, Michael D. Hobbs, Elizabeth A. Stohl, Sindhu Chitteni-Pattu, Ross B. Inman, H. Steven Seifert, Michael M. Cox

Mol Cell. Author manuscript; available in PMC 2014 Jan 17.

Published in final edited form as: Mol Cell. 2006 Jan 6; 21(1): 41–50. doi: 10.1016/j.molcel.2005.11.011

PMCID:: PMC3894658

Abstract Article PDF–810K

Select item 28818347.

RecQ Promotes Toxic Recombination in Cells Lacking Recombination-Intermediate-Removal Proteins

Daniel B. Magner, Matthew D. Blankschien, Jennifer A. Lee, Jeanine M. Pennington, James R. Lupski, Susan M. Rosenberg

Mol Cell. Author manuscript; available in PMC 2010 Jun 7.

Published in final edited form as: Mol Cell. 2007 Apr 27; 26(2): 273–286. doi: 10.1016/j.molcel.2007.03.012

PMCID:: PMC2881834

Abstract Article PDF–2.5M

Select item 27157118.

Nucleotide Excision Repair Is a Predominant Mechanism for Processing Nitrofurazone-Induced DNA Damage in Escherichia coli

Katherine R. Ona, Charmain T. Courcelle, Justin Courcelle

J Bacteriol. 2009 Aug; 191(15): 4959–4965. Published online 2009 May 22. doi: 10.1128/JB.00495-09

PMCID:: PMC2715711

Abstract Article PDF–711K

Select item 26855329.

Reconstitution of initial steps of dsDNA break repair by the RecF pathway of E. coli

Naofumi Handa, Katsumi Morimatsu, Susan T. Lovett, Stephen C. Kowalczykowski

Genes Dev. 2009 May 15; 23(10): 1234–1245. doi: 10.1101/gad.1780709

PMCID:: PMC2685532

Abstract Article PDF–898K

Select item 251953910.

UvrD and UvrD252 Counteract RecQ, RecJ, and RecFOR in a rep Mutant of Escherichia coli

Roxane Lestini, Bénédicte Michel

J Bacteriol. 2008 Sep; 190(17): 5995–6001. Published online 2008 Jun 20. doi: 10.1128/JB.00620-08

PMCID:: PMC2519539

Abstract Article PDF–144K

Select item 217531811.

Deficiency of RecA-dependent RecFOR and RecBCD pathways causes increased instability of the (GAA·TTC)_n sequence when GAA is the lagging strand template

Laura M. Pollard, Yogesh K. Chutake, Paul M. Rindler, Sanjay I. Bidichandani

Nucleic Acids Res. 2007 Nov; 35(20): 6884–6894. Published online 2007 Oct 11. doi: 10.1093/nar/gkm810

PMCID:: PMC2175318

Abstract Article PDF–2.5M

Select item 169890812.

RecFOR proteins are essential for Pol V-mediated translesion synthesis and mutagenesis

Shingo Fujii, Asako Isogawa, Robert P Fuchs

EMBO J. 2006 Dec 13; 25(24): 5754–5763. Published online 2006 Nov 30. doi: 10.1038/sj.emboj.7601474

PMCID:: PMC1698908

Abstract Article PDF–528K

Select item 169861913.

Roles of PriA Protein and Double-Strand DNA Break Repair Functions in UV-Induced Restriction Alleviation in Escherichia coli

Ivana Ivančić-Baće, Ignacija Vlašić, Gordana Čogelja-Čajo, Krunoslav Brčić-Kostić, Erika Salaj-Šmic

Genetics. 2006 Dec; 174(4): 2137–2149. doi: 10.1534/genetics.106.063750

PMCID:: PMC1698619

Abstract Article PDF–233K

Select item 168148114.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 163644715.

Replication fork blockage by transcription factor-DNA complexes in Escherichia coli

Bryony T. I. Payne, Ingeborg C. van Knippenberg, Hazel Bell, Sergio R. Filipe, David J. Sherratt, Peter McGlynn

Nucleic Acids Res. 2006 Oct; 34(18): 5194–5202. Published online 2006 Sep 25. doi: 10.1093/nar/gkl682

PMCID:: PMC1636447

Abstract Article PDF–356K

Select item 163627616.

sbcB15 and ΔsbcB Mutations Activate Two Types of RecF Recombination Pathways in Escherichia coli

Ksenija Zahradka, Sanela Šimić, Maja Buljubašić, Mirjana Petranović, Damir Đermić, Davor Zahradka

J Bacteriol. 2006 Nov; 188(21): 7562–7571. Published online 2006 Aug 25. doi: 10.1128/JB.00613-06

PMCID:: PMC1636276

Abstract Article PDF–171K

Select item 154009217.

Distinguishing Characteristics of Hyperrecombinogenic RecA Protein from Pseudomonas aeruginosa Acting in Escherichia coli

Dmitry M. Baitin, Irina V. Bakhlanova, Yury V. Kil, Michael M. Cox, Vladislav A. Lanzov

J Bacteriol. 2006 Aug; 188(16): 5812–5820. doi: 10.1128/JB.00358-06

PMCID:: PMC1540092

Abstract Article PDF–223K

Select item 152207418.

Regulon and promoter analysis of the E. coli heat-shock factor, σ³², reveals a multifaceted cellular response to heat stress

Gen Nonaka, Matthew Blankschien, Christophe Herman, Carol A. Gross, Virgil A. Rhodius

Genes Dev. 2006 Jul 1; 20(13): 1776–1789. doi: 10.1101/gad.1428206

PMCID:: PMC1522074

Abstract Article PDF–548K

Select item 145705219.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806