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Items: 15

1.
Affinity-based capture and identification of protein effectors of the growth regulator ppGpp
Boyuan Wang, Peng Dai, David Ding, Amanda Del Rosario, Robert A. Grant, Bradley L. Pentelute, Michael T. Laub
Nat Chem Biol. Author manuscript; available in PMC 2019 Jun 17.
Published in final edited form as: Nat Chem Biol. 2019 Feb; 15(2): 141–150. Published online 2018 Dec 17. doi: 10.1038/s41589-018-0183-4
Correction in:
Nat Chem Biol. 2019 May 10
PMCID:
PMC6366861
AbstractArticlePDF–2.2M
2.
The GTPase BipA expressed at low temperature in Escherichia coli assists ribosome assembly and has chaperone-like activity
Eunsil Choi, Jihwan Hwang
J Biol Chem. 2018 Nov 23; 293(47): 18404–18419. Published online 2018 Oct 10. doi: 10.1074/jbc.RA118.002295
PMCID:
PMC6254333
AbstractArticlePDF–2.0M
3.
Structural and Functional Analysis of BipA, a Regulator of Virulence in Enteropathogenic Escherichia coli
Haitian Fan, Joseph Hahm, Stephen Diggs, J. Jefferson P. Perry, Gregor Blaha
J Biol Chem. 2015 Aug 21; 290(34): 20856–20864. Published online 2015 Jul 10. doi: 10.1074/jbc.M115.659136
PMCID:
PMC4543647
AbstractArticlePDF–2.1M
4.
Efficient Assembly of Ribosomes Is Inhibited by Deletion of bipA in Escherichia coli
Promisree Choudhury, Ann M. Flower
J Bacteriol. 2015 May; 197(10): 1819–1827. Prepublished online 2015 Mar 16. Published online 2015 Apr 17. doi: 10.1128/JB.00023-15
PMCID:
PMC4402399
AbstractArticlePDF–2.0M
5.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
AbstractArticlePDF–1.1M
6.
Inferring gene function from evolutionary change in signatures of translation efficiency
Anita Krisko, Tea Copic, Toni Gabaldón, Ben Lehner, Fran Supek
Genome Biol. 2014; 15(3): R44. Published online 2014 Mar 3. doi: 10.1186/gb-2014-15-3-r44
PMCID:
PMC4054840
AbstractArticlePDF–2.2M
7.
Suppression of ΔbipA Phenotypes in Escherichia coli by Abolishment of Pseudouridylation at Specific Sites on the 23S rRNA
Karthik Krishnan, Ann M. Flower
J Bacteriol. 2008 Dec; 190(23): 7675–7683. Published online 2008 Sep 26. doi: 10.1128/JB.00835-08
PMCID:
PMC2583627
AbstractArticlePDF–825K
8.
Salmonella enterica Serovar Typhimurium BipA Exhibits Two Distinct Ribosome Binding Modes
Megan A. deLivron, Victoria L. Robinson
J Bacteriol. 2008 Sep; 190(17): 5944–5952. Published online 2008 Jul 11. doi: 10.1128/JB.00763-08
PMCID:
PMC2519513
AbstractArticlePDF–676K
9.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
AbstractArticlePDF–1.0M
10.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
11.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
12.
Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes.
G Plunkett, 3rd, V Burland, D L Daniels, F R Blattner
Nucleic Acids Res. 1993 Jul 25; 21(15): 3391–3398. doi: 10.1093/nar/21.15.3391
PMCID:
PMC331436
SummaryPage BrowsePDF–1.4M
13.
Factors Influencing the Identification of Transcription Factor Binding Sites by Cross-Species Comparison
Lee Ann McCue, William Thompson, C. Steven Carmack, Charles E. Lawrence
Genome Res. 2002 Oct; 12(10): 1523–1532. doi: 10.1101/gr.323602
PMCID:
PMC187528
AbstractArticlePDF–192K
14.
An Escherichia coli MG1655 Lipopolysaccharide Deep-Rough Core Mutant Grows and Survives in Mouse Cecal Mucus but Fails To Colonize the Mouse Large Intestine
Annette K. Møller, Mary P. Leatham, Tyrrell Conway, Piet J. M. Nuijten, Louise A. M. de Haan, Karen A. Krogfelt, Paul S. Cohen
Infect Immun. 2003 Apr; 71(4): 2142–2152. doi: 10.1128/IAI.71.4.2142-2152.2003
PMCID:
PMC152069
AbstractArticlePDF–1.2M
15.
Regulation of the Escherichia coli K5 Capsule Gene Cluster: Evidence for the Roles of H-NS, BipA, and Integration Host Factor in Regulation of Group 2 Capsule Gene Clusters in Pathogenic E. coli
Sonya Rowe, Nigel Hodson, Gary Griffiths, Ian S. Roberts
J Bacteriol. 2000 May; 182(10): 2741–2745. doi: 10.1128/jb.182.10.2741-2745.2000
PMCID:
PMC101981
AbstractArticlePDF–113K

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