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Items: 1 to 20 of 71

1.
Cross-Linking Mass Spectrometry Uncovers Interactions Between High-Density Lipoproteins and the SARS-CoV-2 Spike Glycoprotein
Sean A. Burnap, Ana Maria Ortega-Prieto, Jose M. Jimenez-Guardeño, Hashim Ali, Kaloyan Takov, Matthew Fish, Manu Shankar-Hari, Mauro Giacca, Michael H. Malim, Manuel Mayr
Mol Cell Proteomics. 2023 Aug; 22(8): 100600. Published online 2023 Jun 19. doi: 10.1016/j.mcpro.2023.100600
PMCID:
PMC10279469
AbstractArticlePDF–3.2M
2.
Proteomic analysis of ubiquitination substrates reveals a CTLH E3 ligase complex‐dependent regulation of glycolysis
Matthew E. R. Maitland, Miljan Kuljanin, Xu Wang, Gilles A. Lajoie, Caroline Schild‐Poulter
FASEB J. 2021 Sep; 35(9): e21825. Published online 2021 Aug 12. doi: 10.1096/fj.202100664R
PMCID:
PMC9292413
AbstractArticlePDF–1.5M
3.
A functional reference map of the RNF8 interactome in cancer
Chuanyang Liu, Jingyu Kuang, Yuxuan Wang, Ting Duan, Lu Min, Chenyu Lu, Tianyi Zhang, Ruifen Chen, Ying Wu, Lingyun Zhu
Biol Direct. 2022; 17: 17. Published online 2022 Jul 13. doi: 10.1186/s13062-022-00331-z
PMCID:
PMC9277853
AbstractArticlePDF–5.9M
4.
A protein interaction landscape of breast cancer
Minkyu Kim, Jisoo Park, Mehdi Bouhaddou, Kyumin Kim, Ajda Rojc, Maya Modak, Margaret Soucheray, Michael J. McGregor, Patrick O’Leary, Denise Wolf, Erica Stevenson, Tzeh Keong Foo, Dominique Mitchell, Kari A. Herrington, Denise P. Muñoz, Beril Tutuncuoglu, Kuei-Ho Chen, Fan Zheng, Jason F. Kreisberg, Morgan E. Diolaiti, John D. Gordan, Jean-Philippe Coppé, Danielle L. Swaney, Bing Xia, Laura van ’t Veer, Alan Ashworth, Trey Ideker, Nevan Krogan
Science. Author manuscript; available in PMC 2022 Apr 26.
Published in final edited form as: Science. 2021 Oct; 374(6563): eabf3066. Published online 2021 Oct 1. doi: 10.1126/science.abf3066
PMCID:
PMC9040556
AbstractArticlePDF–2.2M
5.
Evidence that the transcriptional repressor ICER is regulated via the N-end rule for ubiquitination
Angelo Cirinelli, Justin Wheelan, Christopher Grieg, Carlos A. Molina
Exp Cell Res. Author manuscript; available in PMC 2023 May 1.
Published in final edited form as: Exp Cell Res. 2022 May 1; 414(1): 113083. Published online 2022 Feb 26. doi: 10.1016/j.yexcr.2022.113083
PMCID:
PMC8930515
AbstractArticlePDF–1.9M
6.
SARS-CoV-2 RNAemia and proteomic trajectories inform prognostication in COVID-19 patients admitted to intensive care
Clemens Gutmann, Kaloyan Takov, Sean A. Burnap, Bhawana Singh, Hashim Ali, Konstantinos Theofilatos, Ella Reed, Maria Hasman, Adam Nabeebaccus, Matthew Fish, Mark JW. McPhail, Kevin O’Gallagher, Lukas E. Schmidt, Christian Cassel, Marieke Rienks, Xiaoke Yin, Georg Auzinger, Salvatore Napoli, Salma F. Mujib, Francesca Trovato, Barnaby Sanderson, Blair Merrick, Umar Niazi, Mansoor Saqi, Konstantina Dimitrakopoulou, Rafael Fernández-Leiro, Silke Braun, Romy Kronstein-Wiedemann, Katie J. Doores, Jonathan D. Edgeworth, Ajay M. Shah, Stefan R. Bornstein, Torsten Tonn, Adrian C. Hayday, Mauro Giacca, Manu Shankar-Hari, Manuel Mayr
Nat Commun. 2021; 12: 3406. Published online 2021 Jun 7. doi: 10.1038/s41467-021-23494-1
PMCID:
PMC8184784
AbstractArticlePDF–7.5M
7.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
8.
Apolipoprotein D
Eric Rassart, Frederik Desmarais, Ouafa Najyb, Karl-F. Bergeron, Catherine Mounier
Gene. Author manuscript; available in PMC 2021 Sep 25.
Published in final edited form as: Gene. 2020 Sep 25; 756: 144874. Published online 2020 Jun 15. doi: 10.1016/j.gene.2020.144874
PMCID:
PMC8011330
AbstractArticlePDF–707K
9.
USP11 mediates repair of DNA–protein cross-links by deubiquitinating SPRTN metalloprotease
Megan Perry, Meghan Biegert, Sai Sundeep Kollala, Halle Mallard, Grace Su, Manohar Kodavati, Natasha Kreiling, Alexander Holbrook, Gargi Ghosal
J Biol Chem. 2021 Jan-Jun; 296: 100396. Published online 2021 Feb 7. doi: 10.1016/j.jbc.2021.100396
PMCID:
PMC7960550
AbstractArticlePDF–1.5M
10.
Neuroprotective Effect of Apolipoprotein D in Cuprizone-Induced Cell Line Models: A Potential Therapeutic Approach for Multiple Sclerosis and Demyelinating Diseases
Eva Martínez-Pinilla, Núria Rubio-Sardón, Rafael Peláez, Enrique García-Álvarez, Eva del Valle, Jorge Tolivia, Ignacio M. Larráyoz, Ana Navarro
Int J Mol Sci. 2021 Feb; 22(3): 1260. Published online 2021 Jan 27. doi: 10.3390/ijms22031260
PMCID:
PMC7866080
AbstractArticlePDF–3.8M
11.
Enrichment of apolipoprotein A-IV and apolipoprotein D in the HDL proteome is associated with HDL functions in diabetic kidney disease without dialysis
Monique F. M. Santana, Aécio L. A. Lira, Raphael S. Pinto, Carlos A. Minanni, Amanda R. M. Silva, Maria I. B. A. C. Sawada, Edna R. Nakandakare, Maria L. C. Correa-Giannella, Marcia S. Queiroz, Graziella E. Ronsein, Marisa Passarelli
Lipids Health Dis. 2020; 19: 205. Published online 2020 Sep 14. doi: 10.1186/s12944-020-01381-w
PMCID:
PMC7488728
AbstractArticlePDF–1.2M
12.
Kinase Interaction Network Expands Functional and Disease Roles of Human Kinases
Marija Buljan, Rodolfo Ciuffa, Audrey van Drogen, Anton Vichalkovski, Martin Mehnert, George Rosenberger, Sohyon Lee, Markku Varjosalo, Lucia Espona Pernas, Vincent Spegg, Berend Snijder, Ruedi Aebersold, Matthias Gstaiger
Mol Cell. 2020 Aug 6; 79(3): 504–520.e9. doi: 10.1016/j.molcel.2020.07.001
PMCID:
PMC7427327
AbstractArticle
13.
Hepatitis B Virus HBx Protein Mediates the Degradation of Host Restriction Factors through the Cullin 4 DDB1 E3 Ubiquitin Ligase Complex
Marissa M. Minor, F. Blaine Hollinger, Adrienne L. McNees, Sung Yun Jung, Antrix Jain, Joseph M. Hyser, Karl-Dimiter Bissig, Betty L. Slagle
Cells. 2020 Apr; 9(4): 834. Published online 2020 Mar 30. doi: 10.3390/cells9040834
PMCID:
PMC7226812
AbstractArticlePDF–2.3M
14.
A reference map of the human binary protein interactome
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
Nature. Author manuscript; available in PMC 2020 Oct 8.
Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x
PMCID:
PMC7169983
AbstractArticlePDF–5.4M
15.
Increase in placental apolipoprotein D as an adaptation to human gestational diabetes
A. Navarro, A. Alonso, P. Garrido, C. González, C. González del Rey, C. Ordoñez, J. Tolivia
Placenta. 2010 Jan; 31(1): 25–31. Published online 2009 Nov 26. doi: 10.1016/j.placenta.2009.11.002
PMCID:
PMC7124627
AbstractArticlePDF–1.6M
16.
Characterization of nuclear factors modulating the apolipoprotein D promoter during growth arrest: Implication of PARP-1, APEX-1 and ERK1/2 catalytic activities
Louis-Charles Levros, Jr., Sonia Do Carmo, Elsy Edouard, Philippe Legault, Cyndia Charfi, Eric Rassart
Biochim Biophys Acta Mol Cell Res. 2010 Sep; 1803(9): 1062–1071. Published online 2010 May 21. doi: 10.1016/j.bbamcr.2010.04.011
PMCID:
PMC7114184
AbstractArticlePDF–1.1M
17.
Apolipoprotein D Overexpression Protects Against Kainate-Induced Neurotoxicity in Mice
Ouafa Najyb, Sonia Do Carmo, Azadeh Alikashani, Eric Rassart
Mol Neurobiol. 2017; 54(6): 3948–3963. Published online 2016 Jun 7. doi: 10.1007/s12035-016-9920-4
PMCID:
PMC7091089
AbstractArticlePDF–5.4M
18.
Binding and Repressive Activities of Apolipoprotein E3 and E4 Isoforms on the Human ApoD Promoter
Louis-Charles Levros, Jr., Marilyne Labrie, Cyndia Charfi, Eric Rassart
Mol Neurobiol. 2013; 48(3): 669–680. Published online 2013 May 30. doi: 10.1007/s12035-013-8456-0
PMCID:
PMC7090986
AbstractArticlePDF–597K
19.
LCAT, ApoD, and ApoA1 Expression and Review of Cholesterol Deposition in the Cornea
Rhonda Flores, Xueting Jin, Janet Chang, Connie Zhang, David G. Cogan, Ernst J. Schaefer, Howard S. Kruth
Biomolecules. 2019 Dec; 9(12): 785. Published online 2019 Nov 26. doi: 10.3390/biom9120785
PMCID:
PMC6995527
AbstractArticlePDF–6.6M
20.
Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations
Robert Fragoza, Jishnu Das, Shayne D. Wierbowski, Jin Liang, Tina N. Tran, Siqi Liang, Juan F. Beltran, Christen A. Rivera-Erick, Kaixiong Ye, Ting-Yi Wang, Li Yao, Matthew Mort, Peter D. Stenson, David N. Cooper, Xiaomu Wei, Alon Keinan, John C. Schimenti, Andrew G. Clark, Haiyuan Yu
Nat Commun. 2019; 10: 4141. Published online 2019 Sep 12. doi: 10.1038/s41467-019-11959-3
PMCID:
PMC6742646
AbstractArticlePDF–1.2M

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