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Items: 1 to 20 of 48

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
The peroxisomal exportomer directly inhibits phosphoactivation of the pexophagy receptor Atg36 to suppress pexophagy in yeast
Houqing Yu, Roarke A Kamber, Vladimir Denic
eLife. 2022; 11: e74531. Published online 2022 Apr 11. doi: 10.7554/eLife.74531
PMCID:
PMC9000956
AbstractArticlePDF–1.0M
5.
Phospholipid flippases and Sfk1 are essential for the retention of ergosterol in the plasma membrane
Takuma Kishimoto, Tetsuo Mioka, Eriko Itoh, David E. Williams, Raymond J. Andersen, Kazuma Tanaka
Mol Biol Cell. 2021 Jul 15; 32(15): 1374–1392. doi: 10.1091/mbc.E20-11-0699
PMCID:
PMC8694040
AbstractArticlePDF–4.3M
6.
Exofacial membrane composition and lipid metabolism regulates plasma membrane P4-ATPase substrate specificity
Bhawik Kumar Jain, Bartholomew P. Roland, Todd R. Graham
J Biol Chem. 2020 Dec 25; 295(52): 17997–18009. Published online 2021 Jan 13. doi: 10.1074/jbc.RA120.014794
PMCID:
PMC7939387
AbstractArticlePDF–2.3M
7.
Transport mechanism of P4 ATPase phosphatidylcholine flippases
Lin Bai, Qinglong You, Bhawik K Jain, H Diessel Duan, Amanda Kovach, Todd R Graham, Huilin Li
eLife. 2020; 9: e62163. Published online 2020 Dec 15. doi: 10.7554/eLife.62163
PMCID:
PMC7773333
AbstractArticlePDF–6.6M
8.
An optogenetic system to control membrane phospholipid asymmetry through flippase activation in budding yeast
Tomomi Suzuki, Tetsuo Mioka, Kazuma Tanaka, Akira Nagatani
Sci Rep. 2020; 10: 12474. Published online 2020 Jul 27. doi: 10.1038/s41598-020-69459-0
PMCID:
PMC7385178
AbstractArticlePDF–8.2M
9.
The PQ-loop protein Any1 segregates Drs2 and Neo1 functions required for viability and plasma membrane phospholipid asymmetry
Mehmet Takar, Yannan Huang, Todd R. Graham
J Lipid Res. 2019 May; 60(5): 1032–1042. Published online 2019 Mar 1. doi: 10.1194/jlr.M093526
PMCID:
PMC6495175
AbstractArticlePDF–1.8M
10.
A systematic approach to identify recycling endocytic cargo depending on the GARP complex
Sebastian Eising, Lisa Thiele, Florian Fröhlich
eLife. 2019; 8: e42837. Published online 2019 Jan 29. doi: 10.7554/eLife.42837
PMCID:
PMC6374077
AbstractArticlePDF–2.3M
11.
Yeast and human P4-ATPases transport glycosphingolipids using conserved structural motifs
Bartholomew P. Roland, Tomoki Naito, Jordan T. Best, Cayetana Arnaiz-Yépez, Hiroyuki Takatsu, Roger J. Yu, Hye-Won Shin, Todd R. Graham
J Biol Chem. 2019 Feb 8; 294(6): 1794–1806. Published online 2018 Dec 10. doi: 10.1074/jbc.RA118.005876
PMCID:
PMC6369285
AbstractArticlePDF–2.4M
12.
The metacaspase Yca1 maintains proteostasis through multiple interactions with the ubiquitin system
Amit Shrestha, Steve Brunette, William Lloyd Stanford, Lynn Arthur Megeney
Cell Discov. 2019; 5: 6. Published online 2019 Jan 22. doi: 10.1038/s41421-018-0071-9
PMCID:
PMC6341073
AbstractArticlePDF–1.7M
13.
Target of rapamycin complex 2–dependent phosphorylation of the coat protein Pan1 by Akl1 controls endocytosis dynamics in Saccharomyces cerevisiae
Clélia Bourgoint, Delphine Rispal, Marina Berti, Ireos Filipuzzi, Stephen B. Helliwell, Manoël Prouteau, Robbie Loewith
J Biol Chem. 2018 Aug 3; 293(31): 12043–12053. Published online 2018 Jun 12. doi: 10.1074/jbc.RA117.001615
PMCID:
PMC6078453
AbstractArticlePDF–3.9M
14.
Phospholipid flippases and Sfk1p, a novel regulator of phospholipid asymmetry, contribute to low permeability of the plasma membrane
Tetsuo Mioka, Konomi Fujimura-Kamada, Nahiro Mizugaki, Takuma Kishimoto, Takamitsu Sano, Hitoshi Nunome, David E. Williams, Raymond J. Andersen, Kazuma Tanaka
Mol Biol Cell. 2018 May 15; 29(10): 1203–1218. doi: 10.1091/mbc.E17-04-0217
PMCID:
PMC5935070
AbstractArticlePDF–2.7M
15.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
16.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
17.
A Functional Link Between Bir1 and the Saccharomyces cerevisiae Ctf19 Kinetochore Complex Revealed Through Quantitative Fitness Analysis
Vasso Makrantoni, Adam Ciesiolka, Conor Lawless, Josefin Fernius, Adele Marston, David Lydall, Michael J. R. Stark
G3 (Bethesda) 2017 Sep; 7(9): 3203–3215. Published online 2017 Jul 28. doi: 10.1534/g3.117.300089
PMCID:
PMC5592945
AbstractArticlePDF–1.7M
18.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
19.
One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy
Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner
Nat Methods. Author manuscript; available in PMC 2016 Sep 22.
Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795
PMCID:
PMC4869835
AbstractArticlePDF–2.7M
20.
Inositol Depletion Restores Vesicle Transport in Yeast Phospholipid Flippase Mutants
Kanako Yamagami, Takaharu Yamamoto, Shota Sakai, Tetsuo Mioka, Takamitsu Sano, Yasuyuki Igarashi, Kazuma Tanaka
PLoS One. 2015; 10(3): e0120108. Published online 2015 Mar 17. doi: 10.1371/journal.pone.0120108
PMCID:
PMC4363822
AbstractArticlePDF–1.8M

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