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Items: 1 to 20 of 34

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking
Lucas J. Marmorale, Huan Jin, Thomas G. Reidy, Brandon Palomino-Alonso, Christopher J. Zysnarski, Fatima Jordan-Javed, Sagar Lahiri, Mara C. Duncan
J Cell Biol. 2024 Mar 4; 223(3): e202309047. Published online 2024 Jan 19. doi: 10.1083/jcb.202309047
PMCID:
PMC10798858
AbstractArticlePDF–6.4M
3.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
4.
The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions
Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman
Mol Cell. Author manuscript; available in PMC 2024 Jun 15.
Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021
PMCID:
PMC10297700
AbstractArticlePDF–2.0M
5.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
6.
α-Synuclein Decreases the Abundance of Proteasome Subunits and Alters Ubiquitin Conjugates in Yeast
Blagovesta Popova, Dajana Galka, Nicola Häffner, Dan Wang, Kerstin Schmitt, Oliver Valerius, Michael Knop, Gerhard H. Braus
Cells. 2021 Sep; 10(9): 2229. Published online 2021 Aug 28. doi: 10.3390/cells10092229
PMCID:
PMC8468666
AbstractArticlePDF–8.0M
7.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
8.
Systematic analysis of bypass suppression of essential genes
Jolanda van Leeuwen, Carles Pons, Guihong Tan, Zi Yang Wang, Jing Hou, Jochen Weile, Marinella Gebbia, Wendy Liang, Ermira Shuteriqi, Zhijian Li, Maykel Lopes, Matej Ušaj, Andreia Dos Santos Lopes, Natascha van Lieshout, Chad L Myers, Frederick P Roth, Patrick Aloy, Brenda J Andrews, Charles Boone
Mol Syst Biol. 2020 Sep; 16(9): e9828. Published online 2020 Sep 17. doi: 10.15252/msb.20209828
PMCID:
PMC7507402
AbstractArticlePDF–1.9M
9.
Elevation of cellular Mg2+ levels by the Mg2+ transporter, Alr1, supports growth of polyamine-deficient Saccharomyces cerevisiae cells
Ashleigh S. Hanner, Matthew Dunworth, Robert A. Casero, Jr., Colin W. MacDiarmid, Myung Hee Park
J Biol Chem. 2019 Nov 8; 294(45): 17131–17142. Published online 2019 Sep 22. doi: 10.1074/jbc.RA119.009705
PMCID:
PMC6851305
AbstractArticlePDF–2.7M
10.
Destabilization of Eukaryote mRNAs by 5′ Proximal Stop Codons Can Occur Independently of the Nonsense-Mediated mRNA Decay Pathway
Barbara Gorgoni, Yun-Bo Zhao, J. Krishnan, Ian Stansfield
Cells. 2019 Aug; 8(8): 800. Published online 2019 Jul 31. doi: 10.3390/cells8080800
PMCID:
PMC6721604
AbstractArticlePDF–1.6M
11.
Identification of factors that promote biogenesis of tRNACGASer
Fu Xu, Yang Zhou, Anders S. Byström, Marcus J.O. Johansson
RNA Biol. 2018; 15(10): 1286–1294. Published online 2018 Oct 18. doi: 10.1080/15476286.2018.1526539
PMCID:
PMC6284589
AbstractArticlePDF–1.4M
12.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
13.
Magnesium uptake by connecting fluid-phase endocytosis to an intracellular inorganic cation filter
Sandra H. Klompmaker, Kid Kohl, Nicolas Fasel, Andreas Mayer
Nat Commun. 2017; 8: 1879. Published online 2017 Dec 1. doi: 10.1038/s41467-017-01930-5
PMCID:
PMC5709425
AbstractArticlePDF–2.2M
14.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
15.
Intersection of calorie restriction and magnesium in the suppression of genome-destabilizing RNA–DNA hybrids
Karan J. Abraham, Janet N.Y. Chan, Jayesh S. Salvi, Brandon Ho, Amanda Hall, Elva Vidya, Ru Guo, Samuel A. Killackey, Nancy Liu, Jeffrey E. Lee, Grant W. Brown, Karim Mekhail
Nucleic Acids Res. 2016 Oct 14; 44(18): 8870–8884. Published online 2016 Aug 29. doi: 10.1093/nar/gkw752
PMCID:
PMC5063000
AbstractArticlePDF–6.7M
16.
Altered RNA processing and export lead to retention of mRNAs near transcription sites and nuclear pore complexes or within the nucleolus
Biplab Paul, Ben Montpetit
Mol Biol Cell. 2016 Sep 1; 27(17): 2742–2756. doi: 10.1091/mbc.E16-04-0244
PMCID:
PMC5007094
AbstractArticlePDF–3.9M
17.
One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy
Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner
Nat Methods. Author manuscript; available in PMC 2016 Sep 22.
Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795
PMCID:
PMC4869835
AbstractArticlePDF–2.7M
18.
Target selection by natural and redesigned PUF proteins
Douglas F. Porter, Yvonne Y. Koh, Brett VanVeller, Ronald T. Raines, Marvin Wickens
Proc Natl Acad Sci U S A. 2015 Dec 29; 112(52): 15868–15873. Published online 2015 Dec 14. doi: 10.1073/pnas.1508501112
PMCID:
PMC4703012
AbstractArticlePDF–1.3M
19.
Characterization of the Interaction between Rfa1 and Rad24 in Saccharomyces cerevisiae
Gunjan Piya, Erica N. Mueller, Heather K. Haas, Padmaja L. Ghospurkar, Timothy M. Wilson, Jaime L. Jensen, Christopher L. Colbert, Stuart J. Haring
PLoS One. 2015; 10(2): e0116512. Published online 2015 Feb 26. doi: 10.1371/journal.pone.0116512
PMCID:
PMC4342240
AbstractArticlePDF–2.0M
20.
Exploring the Yeast Acetylome Using Functional Genomics
Supipi Kaluarachchi Duffy, Helena Friesen, Anastasia Baryshnikova, Jean-Philippe Lambert, Yolanda T. Chong, Daniel Figeys, Brenda Andrews
Cell. Author manuscript; available in PMC 2014 Aug 30.
Published in final edited form as: Cell. 2012 May 11; 149(4): 936–948. doi: 10.1016/j.cell.2012.02.064
PMCID:
PMC4149804
AbstractArticlePDF–2.1M

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